Error in re-building vignettes:
  ...
Loading required package: Rcpp

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Joining, by = "gene"
Joining, by = "cell"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Have 35 cells after filtering
Joining, by = "cell"
Have 20 genes after filtering
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Compiling model
DIAGNOSTIC(S) FROM PARSER:
Info: left-hand side variable (name=result) occurs on right-hand side of assignment, causing inefficient deep copy to avoid aliasing.

the number of chains is less than 1; sampling not done
Saving compiled model to /tmp/Rtmp9w7o4p/DeLorean-exact-sizes.rds
TSP:scaled:none:1; time=2.14600000000002s; LL=-3342.87133124389
R2E:scaled:none:1; time=2.155s; LL=-3446.3185974091
HC:scaled:none:1; time=0.00499999999999545s; LL=-3424.43373468512
OLO:scaled:none:1; time=0.00499999999999545s; LL=-3330.68482625154
GW:scaled:none:1; time=0.00500000000002387s; LL=-3349.45799135956
R2E:unscaled:none:1; time=0.00799999999998136s; LL=-3343.81974209328
TSP:unscaled:none:1; time=0.00999999999999091s; LL=-3330.62837419301
GW:unscaled:none:1; time=0.00399999999999068s; LL=-3348.63477675774
HC:unscaled:none:1; time=0.00399999999999068s; LL=-3534.35154385905
TSP:scaled:pca:1; time=0.00899999999998613s; LL=-3378.1660846678
OLO:unscaled:none:1; time=0.00499999999999545s; LL=-3329.31485666206
HC:scaled:pca:1; time=0.00300000000001432s; LL=-3538.17648021733
R2E:scaled:pca:1; time=0.00899999999998613s; LL=-3382.25926411566
OLO:scaled:pca:1; time=0.0040000000000191s; LL=-3347.16224617898
GW:scaled:pca:1; time=0.00499999999999545s; LL=-3347.16224617898
R2E:unscaled:pca:1; time=0.00800000000000978s; LL=-3409.53312770551
TSP:unscaled:pca:1; time=0.00800000000000978s; LL=-3409.53312770551
GW:unscaled:pca:1; time=0.00399999999999068s; LL=-3356.94532592924
HC:unscaled:pca:1; time=0.00399999999999068s; LL=-3571.61219133015
TSP:scaled:ica:1; time=0.0159999999999911s; LL=-3347.16224617898
OLO:unscaled:pca:1; time=0.00399999999999068s; LL=-3356.94532592924
HC:scaled:ica:1; time=0.00399999999999068s; LL=-3538.17648021733
R2E:scaled:ica:1; time=0.0170000000000243s; LL=-3382.25926411566
OLO:scaled:ica:1; time=0.00500000000002387s; LL=-3347.16224617898
GW:scaled:ica:1; time=0.0040000000000191s; LL=-3347.16224617898
TSP:unscaled:ica:1; time=0.00800000000000978s; LL=-3402.12437535865
R2E:unscaled:ica:1; time=0.00899999999998613s; LL=-3409.53312770551
HC:unscaled:ica:1; time=0.00399999999999068s; LL=-3571.61219133015
GW:unscaled:ica:1; time=0.00399999999999068s; LL=-3356.94532592924
OLO:unscaled:ica:1; time=0.00499999999999545s; LL=-3356.94532592924
TSP:scaled:mds:1; time=0.00800000000000978s; LL=-3382.25926411566
R2E:scaled:mds:1; time=0.00900000000001455s; LL=-3382.25926411566
HC:scaled:mds:1; time=0.00399999999999068s; LL=-3538.17648021733
GW:scaled:mds:1; time=0.00499999999999545s; LL=-3347.16224617898
OLO:scaled:mds:1; time=0.00399999999999068s; LL=-3347.16224617898
TSP:unscaled:mds:1; time=0.00799999999998136s; LL=-3346.22956519588
R2E:unscaled:mds:1; time=0.00799999999998136s; LL=-3409.53312770551
HC:unscaled:mds:1; time=0.00399999999999068s; LL=-3571.61219133015
GW:unscaled:mds:1; time=0.00499999999999545s; LL=-3356.94532592924
OLO:unscaled:mds:1; time=0.00399999999999068s; LL=-3356.94532592924
TSP:scaled:pca:2; time=0.00799999999998136s; LL=-3326.69934517732
R2E:scaled:pca:2; time=0.00900000000001455s; LL=-3442.06024901776
HC:scaled:pca:2; time=0.00399999999999068s; LL=-3383.57034412856
GW:scaled:pca:2; time=0.00499999999999545s; LL=-3454.10405867337
OLO:scaled:pca:2; time=0.00399999999999068s; LL=-3344.01134721221
TSP:unscaled:pca:2; time=0.00800000000000978s; LL=-3390.22110130708
R2E:unscaled:pca:2; time=0.00900000000001455s; LL=-3362.93092921771
HC:unscaled:pca:2; time=0.00300000000001432s; LL=-3453.38938530212
GW:unscaled:pca:2; time=0.00499999999999545s; LL=-3362.42819653523
OLO:unscaled:pca:2; time=0.00399999999999068s; LL=-3315.84935876391
TSP:scaled:kfa:2; time=0.0260000000000105s; LL=-3619.3745797293
R2E:scaled:kfa:2; time=0.0269999999999868s; LL=-3433.1784726441
HC:scaled:kfa:2; time=0.0040000000000191s; LL=-3571.99245361027
GW:scaled:kfa:2; time=0.00399999999999068s; LL=-3453.16277365374
OLO:scaled:kfa:2; time=0.0040000000000191s; LL=-3496.36746113707
TSP:unscaled:kfa:2; time=0.0199999999999818s; LL=-3497.84010532848
R2E:unscaled:kfa:2; time=0.0190000000000055s; LL=-3390.08196153984
HC:unscaled:kfa:2; time=0.0040000000000191s; LL=-3595.6281399507
GW:unscaled:kfa:2; time=0.00499999999999545s; LL=-3428.99269207133
OLO:unscaled:kfa:2; time=0.00399999999999068s; LL=-3476.22202208275
TSP:scaled:ica:2; time=0.00899999999998613s; LL=-3360.12968119959
R2E:scaled:ica:2; time=0.0100000000000193s; LL=-3532.74521858959
HC:scaled:ica:2; time=0.00399999999999068s; LL=-3424.08575546497
GW:scaled:ica:2; time=0.00499999999999545s; LL=-3491.80681607442
OLO:scaled:ica:2; time=0.0040000000000191s; LL=-3336.61952686348
TSP:unscaled:ica:2; time=0.0130000000000052s; LL=-3322.86359623434
R2E:unscaled:ica:2; time=0.01400000000001s; LL=-3481.15100178233
HC:unscaled:ica:2; time=0.0029999999999859s; LL=-3536.30279375395
GW:unscaled:ica:2; time=0.00499999999999545s; LL=-3416.75694850261
OLO:unscaled:ica:2; time=0.00399999999999068s; LL=-3376.41354228384
TSP:scaled:mds:2; time=0.00800000000000978s; LL=-3338.8242577381
R2E:scaled:mds:2; time=0.00899999999998613s; LL=-3450.83565662484
HC:scaled:mds:2; time=0.0040000000000191s; LL=-3383.57034412856
GW:scaled:mds:2; time=0.00499999999999545s; LL=-3454.10405867337
OLO:scaled:mds:2; time=0.0040000000000191s; LL=-3344.01134721221
TSP:unscaled:mds:2; time=0.007000000000005s; LL=-3330.34815845769
R2E:unscaled:mds:2; time=0.00899999999998613s; LL=-3362.93092921771
HC:unscaled:mds:2; time=0.00399999999999068s; LL=-3453.38938530212
GW:unscaled:mds:2; time=0.00399999999999068s; LL=-3362.42819653523
OLO:unscaled:mds:2; time=0.0029999999999859s; LL=-3315.84935876391
TSP:scaled:pca:4; time=0.00900000000001455s; LL=-3320.51687020556
R2E:scaled:pca:4; time=0.00899999999998613s; LL=-3505.59727604867
HC:scaled:pca:4; time=0.00399999999999068s; LL=-3398.69858058101
GW:scaled:pca:4; time=0.00600000000000023s; LL=-3343.9841327843
TSP:unscaled:pca:4; time=0.00800000000000978s; LL=-3306.90550373994
OLO:scaled:pca:4; time=0.00499999999999545s; LL=-3342.02635592373
HC:unscaled:pca:4; time=0.00399999999999068s; LL=-3495.74548416029
R2E:unscaled:pca:4; time=0.00900000000001455s; LL=-3338.3469916339
OLO:unscaled:pca:4; time=0.0029999999999859s; LL=-3316.74075857213
GW:unscaled:pca:4; time=0.0040000000000191s; LL=-3321.00928033271
R2E:scaled:kfa:4; time=0.0249999999999773s; LL=-3502.30357512969
TSP:scaled:kfa:4; time=0.025999999999982s; LL=-3366.55900298352
GW:scaled:kfa:4; time=0.00499999999999545s; LL=-3419.33248474122
HC:scaled:kfa:4; time=0.00499999999999545s; LL=-3502.58901888464
TSP:unscaled:kfa:4; time=0.0229999999999961s; LL=-3441.90919877644
OLO:scaled:kfa:4; time=0.00499999999999545s; LL=-3444.43128566182
HC:unscaled:kfa:4; time=0.0029999999999859s; LL=-3573.95135563145
R2E:unscaled:kfa:4; time=0.0229999999999961s; LL=-3431.84815024243
OLO:unscaled:kfa:4; time=0.0040000000000191s; LL=-3379.94427819787
GW:unscaled:kfa:4; time=0.0040000000000191s; LL=-3496.67153355054
R2E:scaled:ica:4; time=0.0360000000000014s; LL=-3500.80852544973
TSP:scaled:ica:4; time=0.0660000000000025s; LL=-3426.23082281549
GW:scaled:ica:4; time=0.00399999999999068s; LL=-3484.89345991536
HC:scaled:ica:4; time=0.00399999999999068s; LL=-3438.70005079355
TSP:unscaled:ica:4; time=0.0670000000000073s; LL=-3416.67536934108
OLO:scaled:ica:4; time=0.00399999999999068s; LL=-3356.92189483171
HC:unscaled:ica:4; time=0.0040000000000191s; LL=-3489.36270144806
OLO:unscaled:ica:4; time=0.0029999999999859s; LL=-3400.26221030342
R2E:unscaled:ica:4; time=0.0209999999999866s; LL=-3495.57352780328
R2E:scaled:mds:4; time=0.00900000000001455s; LL=-3505.59727604867
GW:unscaled:ica:4; time=0.00399999999999068s; LL=-3504.27643708379
GW:scaled:mds:4; time=0.00499999999999545s; LL=-3343.9841327843
TSP:scaled:mds:4; time=0.00799999999998136s; LL=-3320.51687020556
TSP:unscaled:mds:4; time=0.007000000000005s; LL=-3331.80804380591
HC:scaled:mds:4; time=0.00399999999999068s; LL=-3398.69858058101
HC:unscaled:mds:4; time=0.00399999999999068s; LL=-3495.74548416029
OLO:scaled:mds:4; time=0.00399999999999068s; LL=-3342.02635592373
R2E:unscaled:mds:4; time=0.00900000000001455s; LL=-3338.3469916339
OLO:unscaled:mds:4; time=0.00399999999999068s; LL=-3316.74075857213
GW:unscaled:mds:4; time=0.00499999999999545s; LL=-3321.00928033271
R2E:scaled:pca:8; time=0.00999999999999091s; LL=-3446.3185974091
TSP:scaled:pca:8; time=0.00899999999998613s; LL=-3329.53394908969
GW:scaled:pca:8; time=0.00399999999999068s; LL=-3349.94199468632
HC:scaled:pca:8; time=0.00399999999999068s; LL=-3399.39268303361
TSP:unscaled:pca:8; time=0.00800000000000978s; LL=-3317.37870009498
HC:unscaled:pca:8; time=0.0040000000000191s; LL=-3524.72359017457
OLO:scaled:pca:8; time=0.00399999999999068s; LL=-3340.16706262714
OLO:unscaled:pca:8; time=0.00399999999999068s; LL=-3324.89234984775
R2E:unscaled:pca:8; time=0.00899999999998613s; LL=-3343.81974209328
GW:unscaled:pca:8; time=0.00499999999999545s; LL=-3329.6017395642
R2E:scaled:kfa:8; time=0.032999999999987s; LL=-3554.57435063413
GW:scaled:kfa:8; time=0.00399999999999068s; LL=-3426.94116647583
TSP:scaled:kfa:8; time=0.0300000000000011s; LL=-3393.34673137445
HC:scaled:kfa:8; time=0.00300000000001432s; LL=-3453.34936464769
TSP:unscaled:kfa:8; time=0.0649999999999977s; LL=-3365.7824624942
OLO:scaled:kfa:8; time=0.00300000000001432s; LL=-3435.86973896168
HC:unscaled:kfa:8; time=0.00399999999999068s; LL=-3476.84846456002
R2E:unscaled:kfa:8; time=0.0339999999999918s; LL=-3383.62313632137
OLO:unscaled:kfa:8; time=0.00399999999999068s; LL=-3379.85708565844
GW:unscaled:kfa:8; time=0.00399999999999068s; LL=-3336.97774947046
R2E:scaled:ica:8; time=0.0200000000000102s; LL=-3549.64131714734
GW:scaled:ica:8; time=0.00499999999999545s; LL=-3667.35444434312
TSP:scaled:ica:8; time=0.085000000000008s; LL=-3547.01262382714
HC:scaled:ica:8; time=0.00499999999999545s; LL=-3648.51786884071
TSP:unscaled:ica:8; time=0.0860000000000127s; LL=-3543.45768928449
OLO:scaled:ica:8; time=0.0040000000000191s; LL=-3607.34392491474
HC:unscaled:ica:8; time=0.00399999999999068s; LL=-3660.96545749475
OLO:unscaled:ica:8; time=0.00399999999999068s; LL=-3475.51983298339
R2E:unscaled:ica:8; time=0.0699999999999932s; LL=-3642.47892877729
R2E:scaled:mds:8; time=0.0100000000000193s; LL=-3446.3185974091
GW:unscaled:ica:8; time=0.0040000000000191s; LL=-3618.16721816937
GW:scaled:mds:8; time=0.00499999999999545s; LL=-3349.94199468632
TSP:scaled:mds:8; time=0.00900000000001455s; LL=-3330.03209124554
TSP:unscaled:mds:8; time=0.007000000000005s; LL=-3317.74606649566
HC:scaled:mds:8; time=0.0040000000000191s; LL=-3399.39268303361
HC:unscaled:mds:8; time=0.00399999999999068s; LL=-3524.72359017457
OLO:scaled:mds:8; time=0.00399999999999068s; LL=-3340.16706262714
OLO:unscaled:mds:8; time=0.0040000000000191s; LL=-3324.89234984775
R2E:unscaled:mds:8; time=0.00999999999999091s; LL=-3343.81974209328
GW:unscaled:mds:8; time=0.00499999999999545s; LL=-3329.6017395642
Using ordering TSP:unscaled:pca:4; LL=-3306.90550373994
Using ordering OLO:unscaled:pca:2; LL=-3315.84935876391
Joining, by = "c"
In file included from file1ebd41224763.cpp:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Dense:1:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Core:531:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file1ebd41224763.cpp:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Dense:2:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/LU:47:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file1ebd41224763.cpp:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Dense:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Cholesky:12:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Jacobi:29:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file1ebd41224763.cpp:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Dense:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Cholesky:43:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file1ebd41224763.cpp:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Dense:4:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/QR:17:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Householder:27:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file1ebd41224763.cpp:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Dense:5:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/SVD:48:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file1ebd41224763.cpp:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Dense:6:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Geometry:58:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file1ebd41224763.cpp:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Dense:7:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Eigenvalues:58:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file1ebd41224763.cpp:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/SparseCore:66:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file1ebd41224763.cpp:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Sparse:27:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/OrderingMethods:71:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file1ebd41224763.cpp:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/SparseCholesky:43:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file1ebd41224763.cpp:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Sparse:32:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/SparseQR:35:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file1ebd41224763.cpp:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/Sparse:33:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file1ebd41224763.cpp:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigenForward.h:32:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/CholmodSupport:45:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file1ebd41224763.cpp:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigenForward.h:35:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file1ebd41224763.cpp:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigenForward.h:39:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file1ebd41224763.cpp:3:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/RcppEigenForward.h:40:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file1ebd41224763.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:309:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/prob/multinomial_rng.hpp:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/binomial_rng.hpp:10:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/random/binomial_distribution.hpp:407:9: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types]
        struct {
        ^
In file included from file1ebd41224763.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/heterogeneous_system.hpp:34:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file1ebd41224763.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/dimension.hpp:21:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file1ebd41224763.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/dimension.hpp:21:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/detail/dimension_list.hpp:131:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file1ebd41224763.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/detail/linear_algebra.hpp:20:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file1ebd41224763.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/detail/unscale.hpp:28:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file1ebd41224763.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/detail/conversion_impl.hpp:20:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file1ebd41224763.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/detail/conversion_impl.hpp:21:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file1ebd41224763.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file1ebd41224763.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:49:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal.hpp:316:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_2_ccdf_log.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_2_lccdf.hpp:11:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_ccdf_log.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_lccdf.hpp:24:
In file included from /tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/random/negative_binomial_distribution.hpp:21:
/tmp/Rtmp12HKgH/RLIBS_43351e784ca/BH/include/boost/random/poisson_distribution.hpp:338:9: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types]
        struct {
        ^
file1ebd41224763.cpp:223:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file1ebd41224763.cpp:224:21: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
cov_symmetric(const row_vector_d& tau,
                    ^~~~~~~~~~~~
                    stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file1ebd41224763.cpp:272:9: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
        matrix_d
        ^~~~~~~~
        stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file1ebd41224763.cpp:273:22: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    operator()(const row_vector_d& tau,
                     ^~~~~~~~~~~~
                     stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file1ebd41224763.cpp:281:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file1ebd41224763.cpp:282:11: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
cov(const row_vector_d& tau1,
          ^~~~~~~~~~~~
          stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file1ebd41224763.cpp:283:15: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
        const row_vector_d& tau2,
              ^~~~~~~~~~~~
              stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file1ebd41224763.cpp:325:9: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
        matrix_d
        ^~~~~~~~
        stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file1ebd41224763.cpp:326:22: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    operator()(const row_vector_d& tau1,
                     ^~~~~~~~~~~~
                     stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file1ebd41224763.cpp:327:15: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
        const row_vector_d& tau2,
              ^~~~~~~~~~~~
              stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file1ebd41224763.cpp:336:30: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
pretty_print_tri_lower(const matrix_d& x) {
                             ^~~~~~~~
                             stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file1ebd41224763.cpp:386:22: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
    operator()(const matrix_d& x, std::ostream* pstream__ = &Rcpp::Rcout) const {
                     ^~~~~~~~
                     stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file1ebd41224763.cpp:456:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d cov_symmetric(const row_vector_d& tau, const int& periodic, const double& period, const double& l);
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file1ebd41224763.cpp:456:30: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
matrix_d cov_symmetric(const row_vector_d& tau, const int& periodic, const double& period, const double& l);
                             ^~~~~~~~~~~~
                             stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file1ebd41224763.cpp:461:42: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    Rcpp::traits::input_parameter< const row_vector_d& >::type tau(tauSEXP);
                                         ^~~~~~~~~~~~
                                         stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file1ebd41224763.cpp:470:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d cov(const row_vector_d& tau1, const row_vector_d& tau2, const int& periodic, const double& period, const double& l);
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file1ebd41224763.cpp:470:20: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
matrix_d cov(const row_vector_d& tau1, const row_vector_d& tau2, const int& periodic, const double& period, const double& l);
                   ^~~~~~~~~~~~
                   stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file1ebd41224763.cpp:470:46: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
matrix_d cov(const row_vector_d& tau1, const row_vector_d& tau2, const int& periodic, const double& period, const double& l);
                                             ^~~~~~~~~~~~
                                             stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file1ebd41224763.cpp:475:42: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    Rcpp::traits::input_parameter< const row_vector_d& >::type tau1(tau1SEXP);
                                         ^~~~~~~~~~~~
                                         stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
27 warnings and 20 errors generated.
make[1]: *** [/home/hornik/tmp/R.check/r-devel-clang/Work/build/etc/Makeconf:166: file1ebd41224763.o] Error 1
Quitting from lines 145-146 (DeLorean.Rmd) 
Here is the C++ code that does not compile. Please report bug.
Error: processing vignette ‘DeLorean.Rmd’ failed with diagnostics:
Error 1 occurred building shared library.
Execution halted