Error in re-building vignettes:
  ...
Loading required package: Rcpp

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Joining, by = "gene"
Joining, by = "cell"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Have 35 cells after filtering
Joining, by = "cell"
Have 20 genes after filtering
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Compiling model
DIAGNOSTIC(S) FROM PARSER:
Info: left-hand side variable (name=result) occurs on right-hand side of assignment, causing inefficient deep copy to avoid aliasing.

the number of chains is less than 1; sampling not done
Saving compiled model to /tmp/Rtmppi5iD4/DeLorean-exact-sizes.rds
R2E:scaled:none:1; time=2.03800000000001s; LL=-3400.38745831859
TSP:scaled:none:1; time=2.06400000000002s; LL=-3345.73195235146
GW:scaled:none:1; time=0.00499999999999545s; LL=-3362.04568557408
TSP:unscaled:none:1; time=0.0120000000000005s; LL=-3371.03435443183
HC:scaled:none:1; time=0.00399999999999068s; LL=-3520.87190246263
HC:unscaled:none:1; time=0.0040000000000191s; LL=-3540.51858931723
OLO:unscaled:none:1; time=0.00499999999999545s; LL=-3366.23552972933
OLO:scaled:none:1; time=0.00499999999999545s; LL=-3356.97174084075
R2E:scaled:pca:1; time=0.00999999999999091s; LL=-3502.72298466169
R2E:unscaled:none:1; time=0.00899999999998613s; LL=-3391.10893441774
GW:scaled:pca:1; time=0.00499999999999545s; LL=-3502.72298466169
GW:unscaled:none:1; time=0.00699999999997658s; LL=-3346.11850118947
TSP:unscaled:pca:1; time=0.00900000000001455s; LL=-3517.69993087415
TSP:scaled:pca:1; time=0.00999999999999091s; LL=-3502.72298466169
HC:unscaled:pca:1; time=0.0040000000000191s; LL=-3521.35228983603
HC:scaled:pca:1; time=0.00399999999999068s; LL=-3475.57835169986
OLO:unscaled:pca:1; time=0.0029999999999859s; LL=-3510.40940280432
OLO:scaled:pca:1; time=0.0040000000000191s; LL=-3502.72298466169
R2E:scaled:ica:1; time=0.0120000000000005s; LL=-3502.72298466169
R2E:unscaled:pca:1; time=0.00899999999998613s; LL=-3599.68398788668
GW:scaled:ica:1; time=0.0040000000000191s; LL=-3502.72298466169
GW:unscaled:pca:1; time=0.00399999999999068s; LL=-3510.40940280432
TSP:unscaled:ica:1; time=0.00800000000000978s; LL=-3510.40940280432
TSP:scaled:ica:1; time=0.0149999999999864s; LL=-3507.2715208802
HC:unscaled:ica:1; time=0.00399999999999068s; LL=-3521.35228983603
HC:scaled:ica:1; time=0.00399999999999068s; LL=-3475.57835169986
OLO:unscaled:ica:1; time=0.00399999999999068s; LL=-3510.40940280432
OLO:scaled:ica:1; time=0.00399999999999068s; LL=-3502.72298466169
R2E:scaled:mds:1; time=0.00900000000001455s; LL=-3453.30109043048
R2E:unscaled:ica:1; time=0.00999999999999091s; LL=-3599.68398788668
GW:scaled:mds:1; time=0.00399999999999068s; LL=-3502.72298466169
GW:unscaled:ica:1; time=0.00499999999999545s; LL=-3510.40940280432
TSP:unscaled:mds:1; time=0.00699999999997658s; LL=-3517.69993087415
TSP:scaled:mds:1; time=0.00899999999998613s; LL=-3453.30109043048
HC:unscaled:mds:1; time=0.00399999999999068s; LL=-3521.35228983603
HC:scaled:mds:1; time=0.00399999999999068s; LL=-3475.57835169986
OLO:unscaled:mds:1; time=0.00399999999999068s; LL=-3510.40940280432
OLO:scaled:mds:1; time=0.00399999999999068s; LL=-3502.72298466169
R2E:scaled:pca:2; time=0.00900000000001455s; LL=-3404.91356494514
R2E:unscaled:mds:1; time=0.00900000000001455s; LL=-3599.68398788668
GW:scaled:pca:2; time=0.00399999999999068s; LL=-3409.02509847328
GW:unscaled:mds:1; time=0.00499999999999545s; LL=-3510.40940280432
TSP:unscaled:pca:2; time=0.00800000000000978s; LL=-3380.02993427517
TSP:scaled:pca:2; time=0.00899999999998613s; LL=-3385.7259763656
HC:unscaled:pca:2; time=0.00399999999999068s; LL=-3502.11961447126
HC:scaled:pca:2; time=0.0029999999999859s; LL=-3500.17298006417
OLO:unscaled:pca:2; time=0.0040000000000191s; LL=-3430.15285183706
OLO:scaled:pca:2; time=0.00399999999999068s; LL=-3398.16284390765
R2E:scaled:kfa:2; time=0.0279999999999916s; LL=-3497.59570281375
GW:scaled:kfa:2; time=0.00500000000002387s; LL=-3557.82835026479
R2E:unscaled:pca:2; time=0.00899999999998613s; LL=-3384.12521756706
GW:unscaled:pca:2; time=0.00499999999999545s; LL=-3428.0759273903
TSP:unscaled:kfa:2; time=0.0200000000000102s; LL=-3534.58727643976
HC:unscaled:kfa:2; time=0.00399999999999068s; LL=-3662.57726239776
TSP:scaled:kfa:2; time=0.0600000000000023s; LL=-3505.61386756218
OLO:unscaled:kfa:2; time=0.00300000000001432s; LL=-3588.88696519227
HC:scaled:kfa:2; time=0.00399999999999068s; LL=-3495.86592444091
R2E:scaled:ica:2; time=0.00899999999998613s; LL=-3461.3918189111
OLO:scaled:kfa:2; time=0.00399999999999068s; LL=-3502.65267325983
GW:scaled:ica:2; time=0.00499999999999545s; LL=-3450.44155324224
R2E:unscaled:kfa:2; time=0.0219999999999914s; LL=-3474.74188521222
TSP:unscaled:ica:2; time=0.00899999999998613s; LL=-3403.03448793868
GW:unscaled:kfa:2; time=0.00499999999999545s; LL=-3490.47247588415
HC:unscaled:ica:2; time=0.00399999999999068s; LL=-3461.66974116428
OLO:unscaled:ica:2; time=0.00399999999999068s; LL=-3393.5015421754
TSP:scaled:ica:2; time=0.00999999999999091s; LL=-3426.6128580839
R2E:scaled:mds:2; time=0.00900000000001455s; LL=-3404.91356494514
HC:scaled:ica:2; time=0.0040000000000191s; LL=-3539.79690917768
GW:scaled:mds:2; time=0.00499999999999545s; LL=-3409.02509847328
OLO:scaled:ica:2; time=0.0040000000000191s; LL=-3404.04801524623
TSP:unscaled:mds:2; time=0.007000000000005s; LL=-3411.31738225859
R2E:unscaled:ica:2; time=0.0109999999999957s; LL=-3467.44792726529
HC:unscaled:mds:2; time=0.0040000000000191s; LL=-3502.11961447126
GW:unscaled:ica:2; time=0.00499999999999545s; LL=-3496.95366124377
OLO:unscaled:mds:2; time=0.00399999999999068s; LL=-3430.15285183706
TSP:scaled:mds:2; time=0.00900000000001455s; LL=-3401.19809035138
R2E:scaled:pca:4; time=0.00999999999999091s; LL=-3536.09118389805
HC:scaled:mds:2; time=0.0029999999999859s; LL=-3500.17298006417
GW:scaled:pca:4; time=0.00399999999999068s; LL=-3359.90241194818
OLO:scaled:mds:2; time=0.00399999999999068s; LL=-3398.16284390765
TSP:unscaled:pca:4; time=0.00800000000000978s; LL=-3418.22453230692
R2E:unscaled:mds:2; time=0.00800000000000978s; LL=-3384.12521756706
HC:unscaled:pca:4; time=0.0040000000000191s; LL=-3479.36812457198
GW:unscaled:mds:2; time=0.00499999999999545s; LL=-3428.0759273903
OLO:unscaled:pca:4; time=0.0040000000000191s; LL=-3366.98292701329
TSP:scaled:pca:4; time=0.00900000000001455s; LL=-3347.43484696919
R2E:scaled:kfa:4; time=0.0250000000000057s; LL=-3567.46118706156
HC:scaled:pca:4; time=0.00399999999999068s; LL=-3431.48820507176
GW:scaled:kfa:4; time=0.00399999999999068s; LL=-3522.12273481394
OLO:scaled:pca:4; time=0.00399999999999068s; LL=-3358.37388519644
TSP:unscaled:kfa:4; time=0.0229999999999961s; LL=-3453.48168291612
R2E:unscaled:pca:4; time=0.00800000000000978s; LL=-3395.23905874026
HC:unscaled:kfa:4; time=0.00399999999999068s; LL=-3577.04805464643
GW:unscaled:pca:4; time=0.00500000000002387s; LL=-3380.63472271325
OLO:unscaled:kfa:4; time=0.0040000000000191s; LL=-3410.43129062764
TSP:scaled:kfa:4; time=0.0240000000000009s; LL=-3396.94584868735
R2E:scaled:ica:4; time=0.0150000000000148s; LL=-3472.23434040468
HC:scaled:kfa:4; time=0.00399999999999068s; LL=-3489.06789232265
GW:scaled:ica:4; time=0.00499999999999545s; LL=-3482.11664287088
OLO:scaled:kfa:4; time=0.00399999999999068s; LL=-3465.78442651661
TSP:unscaled:ica:4; time=0.0159999999999911s; LL=-3382.01205185077
HC:unscaled:ica:4; time=0.00399999999999068s; LL=-3540.51738202672
R2E:unscaled:kfa:4; time=0.0550000000000068s; LL=-3580.82216278998
OLO:unscaled:ica:4; time=0.00399999999999068s; LL=-3363.46659411664
GW:unscaled:kfa:4; time=0.00499999999999545s; LL=-3501.63230646028
R2E:scaled:mds:4; time=0.00899999999998613s; LL=-3536.09118389805
TSP:scaled:ica:4; time=0.0139999999999816s; LL=-3498.66582547814
GW:scaled:mds:4; time=0.00399999999999068s; LL=-3359.90241194818
HC:scaled:ica:4; time=0.00300000000001432s; LL=-3553.71791625014
TSP:unscaled:mds:4; time=0.00799999999998136s; LL=-3349.8519759123
OLO:scaled:ica:4; time=0.00399999999999068s; LL=-3376.49623547752
HC:unscaled:mds:4; time=0.00399999999999068s; LL=-3479.36812457198
R2E:unscaled:ica:4; time=0.0149999999999864s; LL=-3478.69523932929
OLO:unscaled:mds:4; time=0.00499999999999545s; LL=-3366.98292701329
GW:unscaled:ica:4; time=0.00800000000000978s; LL=-3450.95216601965
R2E:scaled:pca:8; time=0.0109999999999957s; LL=-3536.09118389805
TSP:scaled:mds:4; time=0.00799999999998136s; LL=-3358.11989752933
GW:scaled:pca:8; time=0.0190000000000055s; LL=-3356.97667759128
HC:scaled:mds:4; time=0.00399999999999068s; LL=-3431.48820507176
TSP:unscaled:pca:8; time=0.00699999999997658s; LL=-3353.77177648692
OLO:scaled:mds:4; time=0.00399999999999068s; LL=-3358.37388519644
HC:unscaled:pca:8; time=0.00300000000001432s; LL=-3541.50165970568
R2E:unscaled:mds:4; time=0.00899999999998613s; LL=-3395.23905874026
OLO:unscaled:pca:8; time=0.00399999999999068s; LL=-3363.60916292293
GW:unscaled:mds:4; time=0.00399999999999068s; LL=-3380.63472271325
R2E:scaled:kfa:8; time=0.0360000000000014s; LL=-3476.5941834593
TSP:scaled:pca:8; time=0.00799999999998136s; LL=-3346.8482860208
GW:scaled:kfa:8; time=0.00399999999999068s; LL=-3403.12795359613
HC:scaled:pca:8; time=0.0040000000000191s; LL=-3535.59150753645
OLO:scaled:pca:8; time=0.00499999999999545s; LL=-3351.95086825725
TSP:unscaled:kfa:8; time=0.0590000000000259s; LL=-3475.46248738773
R2E:unscaled:pca:8; time=0.00800000000000978s; LL=-3391.58451289725
HC:unscaled:kfa:8; time=0.00399999999999068s; LL=-3524.80312916059
GW:unscaled:pca:8; time=0.00499999999999545s; LL=-3356.17763519934
OLO:unscaled:kfa:8; time=0.00399999999999068s; LL=-3424.35086106101
TSP:scaled:kfa:8; time=0.0340000000000202s; LL=-3371.2244490561
R2E:scaled:ica:8; time=0.112000000000023s; LL=-3551.7546594811
HC:scaled:kfa:8; time=0.00300000000001432s; LL=-3481.80026635926
GW:scaled:ica:8; time=0.00399999999999068s; LL=-3517.22518471206
OLO:scaled:kfa:8; time=0.00399999999999068s; LL=-3361.84700876239
TSP:unscaled:ica:8; time=0.054000000000002s; LL=-3548.43637632768
R2E:unscaled:kfa:8; time=0.0300000000000011s; LL=-3540.22200266785
HC:unscaled:ica:8; time=0.00399999999999068s; LL=-3733.73321191442
GW:unscaled:kfa:8; time=0.00499999999999545s; LL=-3485.72805489034
OLO:unscaled:ica:8; time=0.0040000000000191s; LL=-3561.98216517766
TSP:scaled:ica:8; time=0.02800000000002s; LL=-3508.97543068442
R2E:scaled:mds:8; time=0.00999999999999091s; LL=-3536.09118389805
HC:scaled:ica:8; time=0.0040000000000191s; LL=-3530.25098235032
GW:scaled:mds:8; time=0.0040000000000191s; LL=-3356.97667759128
OLO:scaled:ica:8; time=0.00399999999999068s; LL=-3462.2493482001
TSP:unscaled:mds:8; time=0.00799999999998136s; LL=-3385.37410490677
R2E:unscaled:ica:8; time=0.0279999999999916s; LL=-3600.12237399879
HC:unscaled:mds:8; time=0.00399999999999068s; LL=-3541.50165970568
GW:unscaled:ica:8; time=0.00499999999999545s; LL=-3663.65788918412
OLO:unscaled:mds:8; time=0.00399999999999068s; LL=-3363.60916292293
TSP:scaled:mds:8; time=0.00999999999999091s; LL=-3352.43514119616
HC:scaled:mds:8; time=0.00399999999999068s; LL=-3535.59150753645
OLO:scaled:mds:8; time=0.00399999999999068s; LL=-3351.95086825725
R2E:unscaled:mds:8; time=0.00899999999998613s; LL=-3391.58451289725
GW:unscaled:mds:8; time=0.00399999999999068s; LL=-3356.17763519934
Using ordering TSP:scaled:none:1; LL=-3345.73195235146
Using ordering GW:unscaled:none:1; LL=-3346.11850118947
Joining, by = "c"
In file included from file64811bf50d1.cpp:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Dense:1:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Core:531:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file64811bf50d1.cpp:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Dense:2:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/LU:47:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file64811bf50d1.cpp:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Dense:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Cholesky:12:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Jacobi:29:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file64811bf50d1.cpp:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Dense:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Cholesky:43:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file64811bf50d1.cpp:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Dense:4:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/QR:17:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Householder:27:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file64811bf50d1.cpp:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Dense:5:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/SVD:48:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file64811bf50d1.cpp:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Dense:6:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Geometry:58:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file64811bf50d1.cpp:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigenForward.h:30:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Dense:7:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Eigenvalues:58:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file64811bf50d1.cpp:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/SparseCore:66:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file64811bf50d1.cpp:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Sparse:27:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/OrderingMethods:71:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file64811bf50d1.cpp:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/SparseCholesky:43:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file64811bf50d1.cpp:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Sparse:32:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/SparseQR:35:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file64811bf50d1.cpp:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigenForward.h:31:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/Sparse:33:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file64811bf50d1.cpp:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigenForward.h:32:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/CholmodSupport:45:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file64811bf50d1.cpp:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigenForward.h:35:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file64811bf50d1.cpp:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigenForward.h:39:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/unsupported/Eigen/Polynomials:135:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file64811bf50d1.cpp:3:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigen.h:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/RcppEigenForward.h:40:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file64811bf50d1.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:309:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/prob/multinomial_rng.hpp:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/binomial_rng.hpp:10:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/random/binomial_distribution.hpp:407:9: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types]
        struct {
        ^
In file included from file64811bf50d1.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/heterogeneous_system.hpp:34:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file64811bf50d1.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/dimension.hpp:21:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file64811bf50d1.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/dimension.hpp:21:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/detail/dimension_list.hpp:131:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file64811bf50d1.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/detail/linear_algebra.hpp:20:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file64811bf50d1.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/detail/unscale.hpp:28:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file64811bf50d1.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/detail/conversion_impl.hpp:20:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file64811bf50d1.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/detail/conversion_impl.hpp:21:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file64811bf50d1.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:44:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file64811bf50d1.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:325:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:49:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal.hpp:316:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_2_ccdf_log.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_2_lccdf.hpp:11:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_ccdf_log.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_lccdf.hpp:24:
In file included from /tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/random/negative_binomial_distribution.hpp:21:
/tmp/RtmpcFLmbG/RLIBS_5e73e47d16/BH/include/boost/random/poisson_distribution.hpp:338:9: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types]
        struct {
        ^
file64811bf50d1.cpp:223:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file64811bf50d1.cpp:224:21: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
cov_symmetric(const row_vector_d& tau,
                    ^~~~~~~~~~~~
                    stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file64811bf50d1.cpp:272:9: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
        matrix_d
        ^~~~~~~~
        stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file64811bf50d1.cpp:273:22: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    operator()(const row_vector_d& tau,
                     ^~~~~~~~~~~~
                     stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file64811bf50d1.cpp:281:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file64811bf50d1.cpp:282:11: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
cov(const row_vector_d& tau1,
          ^~~~~~~~~~~~
          stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file64811bf50d1.cpp:283:15: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
        const row_vector_d& tau2,
              ^~~~~~~~~~~~
              stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file64811bf50d1.cpp:325:9: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
        matrix_d
        ^~~~~~~~
        stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file64811bf50d1.cpp:326:22: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    operator()(const row_vector_d& tau1,
                     ^~~~~~~~~~~~
                     stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file64811bf50d1.cpp:327:15: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
        const row_vector_d& tau2,
              ^~~~~~~~~~~~
              stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file64811bf50d1.cpp:336:30: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
pretty_print_tri_lower(const matrix_d& x) {
                             ^~~~~~~~
                             stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file64811bf50d1.cpp:386:22: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
    operator()(const matrix_d& x, std::ostream* pstream__ = &Rcpp::Rcout) const {
                     ^~~~~~~~
                     stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file64811bf50d1.cpp:456:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d cov_symmetric(const row_vector_d& tau, const int& periodic, const double& period, const double& l);
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file64811bf50d1.cpp:456:30: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
matrix_d cov_symmetric(const row_vector_d& tau, const int& periodic, const double& period, const double& l);
                             ^~~~~~~~~~~~
                             stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file64811bf50d1.cpp:461:42: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    Rcpp::traits::input_parameter< const row_vector_d& >::type tau(tauSEXP);
                                         ^~~~~~~~~~~~
                                         stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file64811bf50d1.cpp:470:1: error: unknown type name 'matrix_d'; did you mean 'stan::math::matrix_d'?
matrix_d cov(const row_vector_d& tau1, const row_vector_d& tau2, const int& periodic, const double& period, const double& l);
^~~~~~~~
stan::math::matrix_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:19:63: note: 'stan::math::matrix_d' declared here
typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic> matrix_d;
                                                              ^
file64811bf50d1.cpp:470:20: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
matrix_d cov(const row_vector_d& tau1, const row_vector_d& tau2, const int& periodic, const double& period, const double& l);
                   ^~~~~~~~~~~~
                   stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file64811bf50d1.cpp:470:46: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
matrix_d cov(const row_vector_d& tau1, const row_vector_d& tau2, const int& periodic, const double& period, const double& l);
                                             ^~~~~~~~~~~~
                                             stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
file64811bf50d1.cpp:475:42: error: unknown type name 'row_vector_d'; did you mean 'stan::math::row_vector_d'?
    Rcpp::traits::input_parameter< const row_vector_d& >::type tau1(tau1SEXP);
                                         ^~~~~~~~~~~~
                                         stan::math::row_vector_d
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/typedefs.hpp:29:50: note: 'stan::math::row_vector_d' declared here
typedef Eigen::Matrix<double, 1, Eigen::Dynamic> row_vector_d;
                                                 ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
27 warnings and 20 errors generated.
make[1]: *** [/home/hornik/tmp/R.check/r-devel-clang/Work/build/etc/Makeconf:166: file64811bf50d1.o] Error 1
Quitting from lines 145-146 (DeLorean.Rmd) 
Here is the C++ code that does not compile. Please report bug.
Error: processing vignette ‘DeLorean.Rmd’ failed with diagnostics:
Error 1 occurred building shared library.
Execution halted