Error in re-building vignettes:
  ...
Loading required package: ape

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

No ENTREZ API key provided
 Get one via use_entrez()
See https://ncbiinsights.ncbi.nlm.nih.gov/2017/11/02/new-api-keys-for-the-e-utilities/

Retrieving data for taxon 'Allenopithecus_nigroviridis'

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Retrieving data for taxon 'Allocebus_trichotis'

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Retrieving data for taxon 'Alouatta_belzebul'

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Retrieving data for taxon 'Alouatta_caraya'

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Retrieving data for taxon 'Alouatta_coibensis'

Not found. Consider checking the spelling or alternate classification
Warning in taxize_nexml(.) :
  ID for otu Alouatta_coibensis not found. Consider checking the spelling or alternate classification
No ENTREZ API key provided
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Retrieving data for taxon 'Alouatta_fusca'

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Retrieving data for taxon 'Alouatta_palliata'

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Retrieving data for taxon 'Alouatta_pigra'

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Retrieving data for taxon 'Alouatta_sara'

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Retrieving data for taxon 'Alouatta_seniculus'

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Retrieving data for taxon 'Aotus_azarai'

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Retrieving data for taxon 'Aotus_brumbacki'

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Retrieving data for taxon 'Aotus_hershkovitzi'

Not found. Consider checking the spelling or alternate classification
Warning in taxize_nexml(.) :
  ID for otu Aotus_hershkovitzi not found. Consider checking the spelling or alternate classification
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Retrieving data for taxon 'Aotus_infulatus'

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Retrieving data for taxon 'Aotus_lemurinus'

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Retrieving data for taxon 'Aotus_miconax'

Not found. Consider checking the spelling or alternate classification
Warning in taxize_nexml(.) :
  ID for otu Aotus_miconax not found. Consider checking the spelling or alternate classification
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Retrieving data for taxon 'Aotus_nancymaae'

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Retrieving data for taxon 'Aotus_nigriceps'

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Retrieving data for taxon 'Aotus_trivirgatus'

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Retrieving data for taxon 'Aotus_vociferans'

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Retrieving data for taxon 'Arctocebus_aureus'

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Retrieving data for taxon 'Arctocebus_calabarensis'

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Retrieving data for taxon 'Ateles_belzebuth'

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Retrieving data for taxon 'Ateles_chamek'

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Retrieving data for taxon 'Ateles_fusciceps'

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Retrieving data for taxon 'Ateles_geoffroyi'

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Retrieving data for taxon 'Ateles_marginatus'

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Retrieving data for taxon 'Ateles_paniscus'

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Retrieving data for taxon 'Avahi_laniger'

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Retrieving data for taxon 'Brachyteles_arachnoides'

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Retrieving data for taxon 'Cacajao_calvus'

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Retrieving data for taxon 'Cacajao_melanocephalus'

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Retrieving data for taxon 'Callicebus_brunneus'

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Retrieving data for taxon 'Callicebus_caligatus'

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Retrieving data for taxon 'Callicebus_cinerascens'

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Retrieving data for taxon 'Callicebus_cupreus'

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Retrieving data for taxon 'Callicebus_donacophilus'

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Retrieving data for taxon 'Callicebus_dubius'

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Retrieving data for taxon 'Callicebus_hoffmannsi'

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Retrieving data for taxon 'Callicebus_modestus'

Not found. Consider checking the spelling or alternate classification
Warning in taxize_nexml(.) :
  ID for otu Callicebus_modestus not found. Consider checking the spelling or alternate classification
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Retrieving data for taxon 'Callicebus_moloch'

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Retrieving data for taxon 'Callicebus_oenanthe'

Not found. Consider checking the spelling or alternate classification
Warning in taxize_nexml(.) :
  ID for otu Callicebus_oenanthe not found. Consider checking the spelling or alternate classification
No ENTREZ API key provided
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See https://ncbiinsights.ncbi.nlm.nih.gov/2017/11/02/new-api-keys-for-the-e-utilities/

Retrieving data for taxon 'Callicebus_olallae'

Not found. Consider checking the spelling or alternate classification
Warning in taxize_nexml(.) :
  ID for otu Callicebus_olallae not found. Consider checking the spelling or alternate classification
No ENTREZ API key provided
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See https://ncbiinsights.ncbi.nlm.nih.gov/2017/11/02/new-api-keys-for-the-e-utilities/

Retrieving data for taxon 'Callicebus_personatus'

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Retrieving data for taxon 'Callicebus_torquatus'

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Retrieving data for taxon 'Callimico_goeldii'

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Retrieving data for taxon 'Callithrix_argentata'

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Retrieving data for taxon 'Callithrix_aurita'

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Retrieving data for taxon 'Callithrix_flaviceps'

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Retrieving data for taxon 'Callithrix_geoffroyi'

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See https://ncbiinsights.ncbi.nlm.nih.gov/2017/11/02/new-api-keys-for-the-e-utilities/

Retrieving data for taxon 'Callithrix_humeralifera'

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Retrieving data for taxon 'Callithrix_jacchus'

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Retrieving data for taxon 'Callithrix_kuhlii'

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Retrieving data for taxon 'Callithrix_penicillata'

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Retrieving data for taxon 'Callithrix_pygmaea'

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Retrieving data for taxon 'Cebus_albifrons'

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Retrieving data for taxon 'Cebus_apella'

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Retrieving data for taxon 'Cebus_capucinus'

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Retrieving data for taxon 'Cebus_olivaceus'

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Retrieving data for taxon 'Cercocebus_agilis'

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Retrieving data for taxon 'Cercocebus_galeritus'

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Retrieving data for taxon 'Cercocebus_torquatus'

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See https://ncbiinsights.ncbi.nlm.nih.gov/2017/11/02/new-api-keys-for-the-e-utilities/

Retrieving data for taxon 'Cercopithecus_ascanius'

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Retrieving data for taxon 'Cercopithecus_campbelli'

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Retrieving data for taxon 'Cercopithecus_cephus'

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Retrieving data for taxon 'Cercopithecus_diana'

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Retrieving data for taxon 'Cercopithecus_dryas'

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Retrieving data for taxon 'Cercopithecus_erythrogaster'

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Error in the HTTP2 framing layer
Execution halted