Error in re-building vignettes:
  ...

Retrieving data for taxon 'Canis lupus'





More than one TSN found for taxon 'Canis lupus'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Canis lupus'!


Retrieving data for taxon 'Canis latrans'





More than one TSN found for taxon 'Canis latrans'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Canis latrans'!


Retrieving data for taxon 'Acer saccharum'





More than one TSN found for taxon 'Acer saccharum'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Acer saccharum'!


Retrieving data for taxon 'Castor canadensis'





More than one TSN found for taxon 'Castor canadensis'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Castor canadensis'!


Retrieving data for taxon 'Alces alces'





More than one TSN found for taxon 'Alces alces'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Alces alces'!


Retrieving data for taxon 'Acer rubrum'





More than one TSN found for taxon 'Acer rubrum'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Acer rubrum'!


Retrieving data for taxon 'Vulpes vulpes'





More than one TSN found for taxon 'Vulpes vulpes'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Vulpes vulpes'!


Retrieving data for taxon 'Salix babylonica'





More than one TSN found for taxon 'Salix babylonica'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Salix babylonica'!


Retrieving data for taxon 'Odocoileus virginianus'





More than one TSN found for taxon 'Odocoileus virginianus'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Odocoileus virginianus'!


Retrieving data for taxon 'Betula alleghaniensis'





More than one TSN found for taxon 'Betula alleghaniensis'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Betula alleghaniensis'!


Retrieving data for taxon 'Rangifer tarandus'





More than one TSN found for taxon 'Rangifer tarandus'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Rangifer tarandus'!


Retrieving data for taxon 'Juniperus occidentalis'





More than one TSN found for taxon 'Juniperus occidentalis'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Juniperus occidentalis'!


Retrieving data for taxon 'Pinus strobus'





More than one TSN found for taxon 'Pinus strobus'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Pinus strobus'!



Retrieving data for taxon 'Atelocynus'





More than one TSN found for taxon 'Atelocynus'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Atelocynus'!


Retrieving data for taxon 'Canis'





More than one TSN found for taxon 'Canis'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Canis'!


Retrieving data for taxon 'Canis'





More than one TSN found for taxon 'Canis'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Canis'!


Retrieving data for taxon 'Canis'





More than one TSN found for taxon 'Canis'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Canis'!


Retrieving data for taxon 'Canis'





More than one TSN found for taxon 'Canis'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Canis'!


Retrieving data for taxon 'Canis'





More than one TSN found for taxon 'Canis'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Canis'!


Retrieving data for taxon 'Canis'





More than one TSN found for taxon 'Canis'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Canis'!


Retrieving data for taxon 'Canis'





More than one TSN found for taxon 'Canis'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Canis'!


Retrieving data for taxon 'Canis'





More than one TSN found for taxon 'Canis'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Canis'!


Retrieving data for taxon 'Cerdocyon'





More than one TSN found for taxon 'Cerdocyon'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Cerdocyon'!


Retrieving data for taxon 'Chrysocyon'





More than one TSN found for taxon 'Chrysocyon'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Chrysocyon'!


Retrieving data for taxon 'Cuon'





More than one TSN found for taxon 'Cuon'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Cuon'!


Retrieving data for taxon 'Dusicyon'





More than one TSN found for taxon 'Dusicyon'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Dusicyon'!


Retrieving data for taxon 'Lycalopex'





More than one TSN found for taxon 'Lycalopex'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Lycalopex'!


Retrieving data for taxon 'Lycalopex'





More than one TSN found for taxon 'Lycalopex'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Lycalopex'!


Retrieving data for taxon 'Lycalopex'





More than one TSN found for taxon 'Lycalopex'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Lycalopex'!


Retrieving data for taxon 'Lycalopex'





More than one TSN found for taxon 'Lycalopex'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Lycalopex'!


Retrieving data for taxon 'Lycalopex'





More than one TSN found for taxon 'Lycalopex'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Lycalopex'!


Retrieving data for taxon 'Lycaon'





More than one TSN found for taxon 'Lycaon'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Lycaon'!


Retrieving data for taxon 'Nyctereutes'





More than one TSN found for taxon 'Nyctereutes'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Nyctereutes'!


Retrieving data for taxon 'Otocyon'





More than one TSN found for taxon 'Otocyon'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Otocyon'!


Retrieving data for taxon 'Speothos'





More than one TSN found for taxon 'Speothos'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Speothos'!


Retrieving data for taxon 'Urocyon'





More than one TSN found for taxon 'Urocyon'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Urocyon'!


Retrieving data for taxon 'Urocyon'





More than one TSN found for taxon 'Urocyon'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Urocyon'!


Retrieving data for taxon 'Vulpes'





More than one TSN found for taxon 'Vulpes'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Vulpes'!


Retrieving data for taxon 'Vulpes'





More than one TSN found for taxon 'Vulpes'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Vulpes'!


Retrieving data for taxon 'Vulpes'





More than one TSN found for taxon 'Vulpes'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Vulpes'!


Retrieving data for taxon 'Vulpes'





More than one TSN found for taxon 'Vulpes'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Vulpes'!


Retrieving data for taxon 'Vulpes'





More than one TSN found for taxon 'Vulpes'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Vulpes'!


Retrieving data for taxon 'Vulpes'





More than one TSN found for taxon 'Vulpes'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Vulpes'!


Retrieving data for taxon 'Vulpes'





More than one TSN found for taxon 'Vulpes'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Vulpes'!


Retrieving data for taxon 'Vulpes'





More than one TSN found for taxon 'Vulpes'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Vulpes'!


Retrieving data for taxon 'Vulpes'





More than one TSN found for taxon 'Vulpes'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Vulpes'!


Retrieving data for taxon 'Vulpes'





More than one TSN found for taxon 'Vulpes'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Vulpes'!


Retrieving data for taxon 'Vulpes'





More than one TSN found for taxon 'Vulpes'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Vulpes'!


Retrieving data for taxon 'Vulpes'





More than one TSN found for taxon 'Vulpes'!

            Enter rownumber of taxon (other inputs will return 'NA'):


Returned 'NA'!


No TSN found for species 'Vulpes'!


Retrieving data for taxon 'Canis lupus'

Using default key: Please get your own API key via use_eol()
*   Trying 160.111.248.33...
* TCP_NODELAY set
* Connected to eol.org (160.111.248.33) port 80 (#2)
> GET /api/search/1.0.json?q=Canis%2Blupus&page=1&key=44f1a53227f1c0b6238a997fcfe7513415f948d2 HTTP/1.1
Host: eol.org
User-Agent: libcurl/7.59.0 r-curl/3.2 crul/0.6.0
Accept-Encoding: gzip, deflate
Accept: application/json, text/xml, application/xml, */*

< HTTP/1.1 200 OK
< Date: Mon, 03 Sep 2018 05:52:08 GMT
< Content-Type: application/json; charset=utf-8
< Status: 200 OK
< X-UA-Compatible: IE=Edge,chrome=1
< ETag: "9c04743a4e1b1af60c5e77628a55e99d"
< Cache-Control: max-age=0, private, must-revalidate
< X-Request-Id: 94826f704eb888b43aad5d6203e09033
< X-Runtime: 1.145317
< X-Rack-Cache: miss
< Vary: Origin
< Age: 0
< X-Cache: MISS
< X-Cache-Hits: 0
< Accept-Ranges: bytes
< Transfer-Encoding: chunked
< Connection: keep-alive
< 
* Connection #2 to host eol.org left intact
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()

Retrieving data for taxon 'Canis lupus'

Using default key: Please get your own API key via use_eol()
* Found bundle for host eol.org: 0x10e97510 [can pipeline]
* Re-using existing connection! (#2) with host eol.org
* Connected to eol.org (160.111.248.33) port 80 (#2)
> GET /api/search/1.0.json?q=Canis%2Blupus&page=1&key=44f1a53227f1c0b6238a997fcfe7513415f948d2 HTTP/1.1
Host: eol.org
User-Agent: libcurl/7.59.0 r-curl/3.2 crul/0.6.0
Accept-Encoding: gzip, deflate
Accept: application/json, text/xml, application/xml, */*

< HTTP/1.1 200 OK
< Date: Mon, 03 Sep 2018 05:52:17 GMT
< Content-Type: application/json; charset=utf-8
< Status: 200 OK
< X-UA-Compatible: IE=Edge,chrome=1
< ETag: "9c04743a4e1b1af60c5e77628a55e99d"
< Cache-Control: max-age=0, private, must-revalidate
< X-Request-Id: 6e7d58513535a4b2c3339b1e5cc0e467
< X-Runtime: 0.103775
< X-Rack-Cache: miss
< Vary: Origin
< Age: 0
< X-Cache: MISS
< X-Cache-Hits: 0
< Accept-Ranges: bytes
< Transfer-Encoding: chunked
< Connection: keep-alive
< 
* Connection #2 to host eol.org left intact
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Using default key: Please get your own API key via use_eol()
Quitting from lines 41-42 (aptg.Rmd) 
Error: processing vignette 'aptg.Rmd' failed with diagnostics:
There is no stored tree for your taxon
Execution halted