Running ‘test-all.R’ [52s/80s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > library(testthat)
  > test_check("EpiModel")
  Loading required package: EpiModel
  Loading required package: deSolve
  Loading required package: networkDynamic
  Loading required package: network
  network: Classes for Relational Data
  Version 1.13.0.1 created on 2015-08-31.
  copyright (c) 2005, Carter T. Butts, University of California-Irvine
                      Mark S. Handcock, University of California -- Los Angeles
                      David R. Hunter, Penn State University
                      Martina Morris, University of Washington
                      Skye Bender-deMoll, University of Washington
   For citation information, type citation("network").
   Type help("network-package") to get started.
  
  
  networkDynamic: version 0.9.0, created on 2016-01-12
  Copyright (c) 2016, Carter T. Butts, University of California -- Irvine
                      Ayn Leslie-Cook, University of Washington
                      Pavel N. Krivitsky, University of Wollongong
                      Skye Bender-deMoll, University of Washington
                      with contributions from
                      Zack Almquist, University of California -- Irvine
                      David R. Hunter, Penn State University
                      Li Wang
                      Kirk Li, University of Washington
                      Steven M. Goodreau, University of Washington
                      Jeffrey Horner
                      Martina Morris, University of Washington
  Based on "statnet" project software (statnet.org).
  For license and citation information see statnet.org/attribution
  or type citation("networkDynamic").
  
  Loading required package: tergm
  Loading required package: statnet.common
  
  Attaching package: 'statnet.common'
  
  The following object is masked from 'package:base':
  
      order
  
  Loading required package: ergm
  
  ergm: version 3.8.0, created on 2017-08-18
  Copyright (c) 2017, Mark S. Handcock, University of California -- Los Angeles
                      David R. Hunter, Penn State University
                      Carter T. Butts, University of California -- Irvine
                      Steven M. Goodreau, University of Washington
                      Pavel N. Krivitsky, University of Wollongong
                      Martina Morris, University of Washington
                      with contributions from
                      Li Wang
                      Kirk Li, University of Washington
                      Skye Bender-deMoll, University of Washington
  Based on "statnet" project software (statnet.org).
  For license and citation information see statnet.org/attribution
  or type citation("ergm").
  
  NOTE: Versions before 3.6.1 had a bug in the implementation of the bd()
  constriant which distorted the sampled distribution somewhat. In
  addition, Sampson's Monks datasets had mislabeled vertices. See the
  NEWS and the documentation for more details.
  
  
  Attaching package: 'ergm'
  
  The following objects are masked from 'package:statnet.common':
  
      colMeans.mcmc.list, sweep.mcmc.list
  
  
  tergm: version 3.4.1, created on 2017-09-12
  Copyright (c) 2017, Pavel N. Krivitsky, University of Wollongong
                      Mark S. Handcock, University of California -- Los Angeles
                      with contributions from
                      David R. Hunter, Penn State University
                      Steven M. Goodreau, University of Washington
                      Martina Morris, University of Washington
                      Nicole Bohme Carnegie, New York University
                      Carter T. Butts, University of California -- Irvine
                      Ayn Leslie-Cook, University of Washington
                      Skye Bender-deMoll
                      Li Wang
                      Kirk Li, University of Washington
  Based on "statnet" project software (statnet.org).
  For license and citation information see statnet.org/attribution
  or type citation("tergm").
  
  
  * Starting Network Simulation
  Sim = 1/5
  Sim = 2/5
  Sim = 3/5
  Sim = 4/5
  Sim = 5/5
  * Starting Network Simulation
  Sim = 1/5
  Sim = 2/5
  Sim = 3/5
  Sim = 4/5
  Sim = 5/5EpiModel Network Diagnostics
  =======================
  Diagnostic Method: Dynamic
  Simulations: 1
  Time Steps per Sim: 10
  
  Formation Diagnostics
  ----------------------- 
        Target Sim Mean Pct Diff Sim SD
  edges     15     20.3    0.353  1.418
  
  Dissolution Diagnostics
  ----------------------- 
                 Target Sim Mean Pct Diff Sim SD
  Edge Duration   20.00    2.000   -0.900     NA
  Pct Edges Diss   0.05    0.048   -0.044   0.05
  EpiModel Network Diagnostics
  =======================
  Diagnostic Method: Dynamic
  Simulations: 2
  Time Steps per Sim: 10
  
  Formation Diagnostics
  ----------------------- 
        Target Sim Mean Pct Diff Sim SD
  edges     15     10.8    -0.28  2.331
  
  Dissolution Diagnostics
  ----------------------- 
                 Target Sim Mean Pct Diff Sim SD
  Edge Duration   20.00    7.000   -0.650     NA
  Pct Edges Diss   0.05    0.031   -0.379  0.063
  ── 1. Error: Edges only models (@test-netdx.R#28)  ─────────────────────────────
  argument of length 0
  1: plot(dx2, type = "duration") at testthat/test-netdx.R:28
  2: plot.netdx(dx2, type = "duration")
  
  EpiModel Network Diagnostics
  =======================
  Diagnostic Method: Dynamic
  Simulations: 2
  Time Steps per Sim: 50
  
  Formation Diagnostics
  ----------------------- 
              Target Sim Mean Pct Diff Sim SD
  edges           15    17.77    0.185  2.526
  mix.loc.0.1     NA     0.00       NA  0.000
  
  Dissolution Diagnostics
  ----------------------- 
                 Target Sim Mean Pct Diff Sim SD
  Edge Duration  40.000   14.429   -0.639 11.003
  Pct Edges Diss  0.025    0.029    0.161  0.040
  EpiModel Network Diagnostics
  =======================
  Diagnostic Method: Dynamic
  Simulations: 2
  Time Steps per Sim: 50
  
  Formation Diagnostics
  ----------------------- 
                Target Sim Mean Pct Diff Sim SD
  edges             15   14.410   -0.039  3.207
  meandeg           NA    0.576       NA  0.128
  concurrent        NA    5.190       NA  2.901
  nodematch.loc     NA   14.410       NA  3.207
  
  Dissolution Diagnostics
  ----------------------- 
                 Target Sim Mean Pct Diff Sim SD
  Edge Duration  40.000   17.143   -0.571 12.757
  Pct Edges Diss  0.025    0.026    0.046  0.043
  EpiModel Network Diagnostics
  =======================
  Diagnostic Method: Dynamic
  Simulations: 2
  Time Steps per Sim: 50
  
  Formation Diagnostics
  ----------------------- 
              Target Sim Mean Pct Diff Sim SD
  edges           15    18.11    0.207  2.192
  mix.loc.0.1      0     0.00      NaN  0.000
  
  Dissolution Diagnostics
  ----------------------- 
                 Target Sim Mean Pct Diff Sim SD
  Edge Duration  40.000   13.375   -0.666  7.949
  Pct Edges Diss  0.025    0.022   -0.107  0.032
  
  Network Diagnostics
  -----------------------
  - Simulating 250 networks
  - Calculating formation statistics
  * Starting Network Simulation
  Sim = 1/1
  1/10	
  2/10	
  3/10	
  4/10	
  5/10	
  6/10	
  7/10	
  8/10	
  9/10	
  10/10	══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 283 SKIPPED: 77 FAILED: 1
  1. Error: Edges only models (@test-netdx.R#28) 
  
  Error: testthat unit tests failed
  In addition: Warning messages:
  1: replacing previous import 'statnet.common::colMeans.mcmc.list' by 'ergm::colMeans.mcmc.list' when loading 'tergm' 
  2: replacing previous import 'statnet.common::sweep.mcmc.list' by 'ergm::sweep.mcmc.list' when loading 'tergm' 
  Execution halted