Running examples in ‘SimPhe-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read.simu.pars
> ### Title: Read parameters
> ### Aliases: read.simu.pars
> 
> ### ** Examples
> 
> # simulation parameters:
> fpar.path <- system.file("extdata", "simupars.txt", package="SimPhe")
> 
> read.simu.pars(fpar.path)
$P1mean
  mean
1   10

$P1main
    SNP additive dominance
1 SNP01      4.0       2.0
2 SNP02      2.5       1.5
3 SNP03      5.5       1.8
4 SNP04     -2.5       1.0
5 SNP05      8.5       9.8
6 SNP06      8.7       8.4

$P1epistasis
   SNPA  SNPB additive_additive additive_dominance dominance_additive
1 SNP01 SNP02              10.0                2.0                2.8
2 SNP03 SNP04               8.0                3.0                3.5
3 SNP05 SNP06              20.5               20.6               20.4
  dominance_dominance
1                 1.8
2                 2.5
3                10.2

$P1heritability
  heritability
1          0.6

$P2mean
  mean
1   20

$P2main
    SNP additive dominance
1 SNP01      8.0       2.0
2 SNP02      4.5       1.8
3 SNP03      6.5       1.5
4 SNP04     -3.5      -1.2
5 SNP07     10.4       8.6
6 SNP08     12.3      11.9

$P2epistasis
   SNPA  SNPB additive_additive additive_dominance dominance_additive
1 SNP01 SNP02              15.0                4.0                3.0
2 SNP03 SNP04              12.0                5.0                3.5
3 SNP07 SNP08              21.5               20.9               20.5
  dominance_dominance
1                 2.0
2                 2.5
3                20.3

> 
> 
> 
> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
> base::cat("read.simu.pars", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
Error: connections left open:
	all.lines (textConnection)
	all.lines (textConnection)
	all.lines (textConnection)
	all.lines (textConnection)
	all.lines (textConnection)
	all.lines (textConnection)
	all.lines (textConnection)
Execution halted