Running ‘testthat.R’ [261s/331s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(dgo)
  Loading required package: dgodata
  Loading required package: rstan
  Loading required package: ggplot2
  Loading required package: StanHeaders
  rstan (Version 2.17.3, GitRev: 2e1f913d3ca3)
  For execution on a local, multicore CPU with excess RAM we recommend calling
  options(mc.cores = parallel::detectCores()).
  To avoid recompilation of unchanged Stan programs, we recommend calling
  rstan_options(auto_write = TRUE)
  > 
  > # https://stackoverflow.com/questions/12410694/rbundler-build-error-cannot-open-file-startup-rs-no-such-file-or-directory#27994299
  > Sys.setenv("R_TESTS" = "")
  > test_check("dgo")
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:14:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Dense:1:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Core:531:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
      #pragma clang diagnostic pop
                               ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:14:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Dense:2:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/LU:47:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
      #pragma clang diagnostic pop
                               ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:14:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Dense:3:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Cholesky:12:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Jacobi:29:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
      #pragma clang diagnostic pop
                               ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:14:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Dense:3:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Cholesky:43:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
      #pragma clang diagnostic pop
                               ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:14:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Dense:4:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/QR:17:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Householder:27:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
      #pragma clang diagnostic pop
                               ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:14:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Dense:5:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/SVD:48:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
      #pragma clang diagnostic pop
                               ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:14:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Dense:6:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Geometry:58:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
      #pragma clang diagnostic pop
                               ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:14:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Dense:7:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Eigenvalues:58:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
      #pragma clang diagnostic pop
                               ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:83:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Sparse:26:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/SparseCore:66:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
      #pragma clang diagnostic pop
                               ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:83:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Sparse:27:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/OrderingMethods:71:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
      #pragma clang diagnostic pop
                               ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:83:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Sparse:29:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/SparseCholesky:43:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
      #pragma clang diagnostic pop
                               ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:83:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Sparse:32:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/SparseQR:35:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
      #pragma clang diagnostic pop
                               ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:83:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/Sparse:33:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
      #pragma clang diagnostic pop
                               ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:288:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/prob/multinomial_rng.hpp:10:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/binomial_rng.hpp:4:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/random/binomial_distribution.hpp:407:9: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types]
          struct {
          ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:298:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:38:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint.hpp:25:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/quantity.hpp:29:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/conversion.hpp:17:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/detail/conversion_impl.hpp:20:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/heterogeneous_system.hpp:34:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
  #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
           ^
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
       <boost/typeof/incr_registration_group.hpp>
              ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:298:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:38:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint.hpp:25:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/quantity.hpp:29:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/conversion.hpp:17:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/detail/conversion_impl.hpp:20:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/heterogeneous_system.hpp:35:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/dimension.hpp:21:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
  #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
           ^
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
       <boost/typeof/incr_registration_group.hpp>
              ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:298:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:38:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint.hpp:25:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/quantity.hpp:29:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/conversion.hpp:17:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/detail/conversion_impl.hpp:20:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/heterogeneous_system.hpp:35:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/dimension.hpp:21:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/detail/dimension_list.hpp:131:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
  #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
           ^
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
       <boost/typeof/incr_registration_group.hpp>
              ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:298:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:38:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint.hpp:25:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/quantity.hpp:29:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/conversion.hpp:17:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/detail/conversion_impl.hpp:20:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/heterogeneous_system.hpp:39:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/detail/linear_algebra.hpp:20:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
  #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
           ^
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
       <boost/typeof/incr_registration_group.hpp>
              ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:298:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:38:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint.hpp:25:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/quantity.hpp:29:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/conversion.hpp:17:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/detail/conversion_impl.hpp:20:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/heterogeneous_system.hpp:40:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/detail/unscale.hpp:28:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
  #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
           ^
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
       <boost/typeof/incr_registration_group.hpp>
              ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:298:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:38:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint.hpp:25:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/quantity.hpp:29:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/conversion.hpp:17:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/detail/conversion_impl.hpp:20:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
  #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
           ^
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
       <boost/typeof/incr_registration_group.hpp>
              ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:298:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:38:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint.hpp:25:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/quantity.hpp:29:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/conversion.hpp:17:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/detail/conversion_impl.hpp:21:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
  #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
           ^
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
       <boost/typeof/incr_registration_group.hpp>
              ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:298:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:38:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint.hpp:25:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
  #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
           ^
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
       <boost/typeof/incr_registration_group.hpp>
              ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:298:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:40:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal.hpp:309:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_2_ccdf_log.hpp:5:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_2_lccdf.hpp:10:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_ccdf_log.hpp:5:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_lccdf.hpp:23:
  In file included from /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/random/negative_binomial_distribution.hpp:21:
  /tmp/RtmpdiNvhj/RLIBS_74de47b908fb/BH/include/boost/random/poisson_distribution.hpp:338:9: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types]
          struct {
          ^
  In file included from file1426f585c40.cpp:2379:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:3:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:438:8: warning: 'auto_ptr<stan::io::var_context>' is deprecated [-Wdeprecated-declarations]
    std::auto_ptr<stan::io::var_context> init_context_ptr;
         ^
  /usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../../include/c++/8/backward/auto_ptr.h:287:7: note: 'auto_ptr<stan::io::var_context>' has been explicitly marked deprecated here
      } _GLIBCXX_DEPRECATED;
        ^
  /usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../../include/x86_64-linux-gnu/c++/8/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
  # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                               ^
  In file included from file1426f585c40.cpp:2379:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:3:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:547:10: warning: 'auto_ptr<rstan::rstan_sample_writer>' is deprecated [-Wdeprecated-declarations]
      std::auto_ptr<rstan_sample_writer> sample_writer_ptr;
           ^
  /usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../../include/c++/8/backward/auto_ptr.h:287:7: note: 'auto_ptr<rstan::rstan_sample_writer>' has been explicitly marked deprecated here
      } _GLIBCXX_DEPRECATED;
        ^
  /usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../../include/x86_64-linux-gnu/c++/8/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
  # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                               ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:44:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:17: warning: unused function 'set_zero_all_adjoints' [-Wunused-function]
      static void set_zero_all_adjoints() {
                  ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:45:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints_nested.hpp:17:17: warning: 'static' function 'set_zero_all_adjoints_nested' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration]
      static void set_zero_all_adjoints_nested() {
                  ^
  In file included from file1426f585c40.cpp:8:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
  In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:58:
  /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:17:14: warning: function 'fft_next_good_size' is not needed and will not be emitted [-Wunneeded-internal-declaration]
        size_t fft_next_good_size(size_t N) {
               ^
  28 warnings generated.
  
  SAMPLING FOR MODEL '2017_01_04' NOW (CHAIN 1).
  
  Gradient evaluation took 0.000147 seconds
  1000 transitions using 10 leapfrog steps per transition would take 1.47 seconds.
  Adjust your expectations accordingly!
  
  
  WARNING: No variance estimation is
           performed for num_warmup < 20
  
  Iteration: 1 / 1 [100%]  (Sampling)
  
   Elapsed Time: 2e-06 seconds (Warm-up)
                 0.000227 seconds (Sampling)
                 0.000229 seconds (Total)
  
  
  SAMPLING FOR MODEL '2017_01_04' NOW (CHAIN 1).
  
  Gradient evaluation took 0.000108 seconds
  1000 transitions using 10 leapfrog steps per transition would take 1.08 seconds.
  Adjust your expectations accordingly!
  
  
  WARNING: No variance estimation is
           performed for num_warmup < 20
  
  Iteration: 1 / 1 [100%]  (Sampling)
  
   Elapsed Time: 2e-06 seconds (Warm-up)
                 0.000213 seconds (Sampling)
                 0.000215 seconds (Total)
  
  
  SAMPLING FOR MODEL '2017_01_04' NOW (CHAIN 1).
  
  Gradient evaluation took 9.7e-05 seconds
  1000 transitions using 10 leapfrog steps per transition would take 0.97 seconds.
  Adjust your expectations accordingly!
  
  
  WARNING: No variance estimation is
           performed for num_warmup < 20
  
  Iteration: 1 / 1 [100%]  (Sampling)
  
   Elapsed Time: 2e-06 seconds (Warm-up)
                 0.000236 seconds (Sampling)
                 0.000238 seconds (Total)
  
  
  SAMPLING FOR MODEL '2017_01_04' NOW (CHAIN 1).
  
  Gradient evaluation took 0.000102 seconds
  1000 transitions using 10 leapfrog steps per transition would take 1.02 seconds.
  Adjust your expectations accordingly!
  
  
  WARNING: No variance estimation is
           performed for num_warmup < 20
  
  Iteration: 1 / 1 [100%]  (Sampling)
  
   Elapsed Time: 2e-06 seconds (Warm-up)
                 0.000213 seconds (Sampling)
                 0.000215 seconds (Total)
  
  
  SAMPLING FOR MODEL '2017_01_04' NOW (CHAIN 1).
  
  Gradient evaluation took 9.7e-05 seconds
  1000 transitions using 10 leapfrog steps per transition would take 0.97 seconds.
  Adjust your expectations accordingly!
  
  
  WARNING: No variance estimation is
           performed for num_warmup < 20
  
  Iteration: 1 / 1 [100%]  (Sampling)
  
   Elapsed Time: 2e-06 seconds (Warm-up)
                 0.000213 seconds (Sampling)
                 0.000215 seconds (Total)
  
  
  SAMPLING FOR MODEL '2017_01_04' NOW (CHAIN 1).
  
  Gradient evaluation took 0.000107 seconds
  1000 transitions using 10 leapfrog steps per transition would take 1.07 seconds.
  Adjust your expectations accordingly!
  
  
  WARNING: No variance estimation is
           performed for num_warmup < 20
  
  Iteration: 1 / 1 [100%]  (Sampling)
  
   Elapsed Time: 2e-06 seconds (Warm-up)
                 0.000213 seconds (Sampling)
                 0.000215 seconds (Total)
  
  
  SAMPLING FOR MODEL '2017_01_04' NOW (CHAIN 2).
  
  Gradient evaluation took 8.4e-05 seconds
  1000 transitions using 10 leapfrog steps per transition would take 0.84 seconds.
  Adjust your expectations accordingly!
  
  
  WARNING: No variance estimation is
           performed for num_warmup < 20
  
  Iteration: 1 / 1 [100%]  (Sampling)
  
   Elapsed Time: 2e-06 seconds (Warm-up)
                 0.000192 seconds (Sampling)
                 0.000194 seconds (Total)
  
  
  SAMPLING FOR MODEL '2017_01_04' NOW (CHAIN 1).
  Rejecting initial value:
    Log probability evaluates to log(0), i.e. negative infinity.
    Stan can't start sampling from this initial value.
  
  Gradient evaluation took 0.0001 seconds
  1000 transitions using 10 leapfrog steps per transition would take 1 seconds.
  Adjust your expectations accordingly!
  
  
  WARNING: No variance estimation is
           performed for num_warmup < 20
  
  Iteration: 1 / 1 [100%]  (Sampling)
  
   Elapsed Time: 1e-06 seconds (Warm-up)
                 0.000421 seconds (Sampling)
                 0.000422 seconds (Total)
  
  
  SAMPLING FOR MODEL '2017_01_04' NOW (CHAIN 2).
  
  Gradient evaluation took 7.3e-05 seconds
  1000 transitions using 10 leapfrog steps per transition would take 0.73 seconds.
  Adjust your expectations accordingly!
  
  
  WARNING: No variance estimation is
           performed for num_warmup < 20
  
  Iteration: 1 / 1 [100%]  (Sampling)
  
   Elapsed Time: 1e-06 seconds (Warm-up)
                 0.000211 seconds (Sampling)
                 0.000212 seconds (Total)
  
  ── 1. Error: argument validation works (@test-plot.r#33)  ──────────────────────
  `x` must be a string or a R connection
  1: expect_silent(dgirt_plot(estimates, group_names = c("race3", "state"), time_name = "year", 
         geo_name = "state")) at testthat/test-plot.r:33
  2: quasi_capture(enquo(object), evaluate_promise)
  3: capture(act$val <- eval_bare(get_expr(quo), get_env(quo)))
  4: withr::with_output_sink(temp, withCallingHandlers(withVisible(code), warning = handle_warning, 
         message = handle_message))
  5: force(code)
  6: withCallingHandlers(withVisible(code), warning = handle_warning, message = handle_message)
  7: withVisible(code)
  8: eval_bare(get_expr(quo), get_env(quo))
  9: dgirt_plot(estimates, group_names = c("race3", "state"), time_name = "year", geo_name = "state")
  10: dgirt_plot(estimates, group_names = c("race3", "state"), time_name = "year", geo_name = "state")
  11: .local(x, ...)
  12: plot_internal(x, group_names, time_name, geo_name, y_fun, y_min, y_max)
  13: ggplot2::ggplot(data = samples, ggplot2::aes_string(x = time_name, y = y_fun, color = group_names))
  14: ggplot.default(data = samples, ggplot2::aes_string(x = time_name, y = y_fun, color = group_names))
  15: ggplot2::aes_string(x = time_name, y = y_fun, color = group_names)
  16: lapply(mapping, function(x) {
         if (is.character(x)) {
             x <- rlang::parse_expr(x)
         }
         new_aesthetic(x, env = caller_env)
     })
  17: FUN(X[[i]], ...)
  18: rlang::parse_expr(x)
  19: parse_exprs(x)
  20: abort("`x` must be a string or a R connection")
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 375 SKIPPED: 1 FAILED: 1
  1. Error: argument validation works (@test-plot.r#33) 
  
  Error: testthat unit tests failed
  Execution halted