Error in re-building vignettes:
  ...
Loading required package: MASS
Loading required package: mnormt
Loading required package: gplots

Attaching package: 'gplots'

The following object is masked from 'package:stats':

    lowess

Loading required package: combinat

Attaching package: 'combinat'

The following object is masked from 'package:utils':

    combn

Creating a 'stanmodel' object PFAB
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:14:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Dense:1:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Core:531:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:14:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Dense:2:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/LU:47:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:14:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Dense:3:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Cholesky:12:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Jacobi:29:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:14:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Dense:3:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Cholesky:43:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:14:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Dense:4:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/QR:17:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Householder:27:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:14:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Dense:5:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/SVD:48:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:14:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Dense:6:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Geometry:58:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:14:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Dense:7:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Eigenvalues:58:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:83:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Sparse:26:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/SparseCore:66:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:83:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Sparse:27:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/OrderingMethods:71:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:83:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Sparse:29:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/SparseCholesky:43:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:83:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Sparse:32:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/SparseQR:35:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:83:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/Sparse:33:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
    #pragma clang diagnostic pop
                             ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:288:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/prob/multinomial_rng.hpp:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/binomial_rng.hpp:4:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/random/binomial_distribution.hpp:407:9: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types]
        struct {
        ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:298:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:38:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/heterogeneous_system.hpp:34:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:298:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:38:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/dimension.hpp:21:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:298:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:38:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/heterogeneous_system.hpp:35:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/dimension.hpp:21:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/detail/dimension_list.hpp:131:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:298:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:38:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/heterogeneous_system.hpp:39:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/detail/linear_algebra.hpp:20:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:298:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:38:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/detail/conversion_impl.hpp:20:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/heterogeneous_system.hpp:40:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/detail/unscale.hpp:28:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:298:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:38:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/detail/conversion_impl.hpp:20:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:298:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:38:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/quantity.hpp:29:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/conversion.hpp:17:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/detail/conversion_impl.hpp:21:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:298:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:38:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint.hpp:25:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token]
#include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP()
         ^
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/typeof/typeof.hpp:196:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP'
     <boost/typeof/incr_registration_group.hpp>
            ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:298:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/arr.hpp:40:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal.hpp:309:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_2_ccdf_log.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_2_lccdf.hpp:10:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_ccdf_log.hpp:5:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/scal/prob/neg_binomial_lccdf.hpp:23:
In file included from /tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/random/negative_binomial_distribution.hpp:21:
/tmp/RtmptpnvcH/RLIBS_68da687a9dd0/BH/include/boost/random/poisson_distribution.hpp:338:9: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types]
        struct {
        ^
In file included from file38016c3471f8.cpp:792:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:3:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:438:8: warning: 'auto_ptr<stan::io::var_context>' is deprecated [-Wdeprecated-declarations]
  std::auto_ptr<stan::io::var_context> init_context_ptr;
       ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../../include/c++/8/backward/auto_ptr.h:287:7: note: 'auto_ptr<stan::io::var_context>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../../include/x86_64-linux-gnu/c++/8/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from file38016c3471f8.cpp:792:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/rstaninc.hpp:3:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rstan/include/rstan/stan_fit.hpp:547:10: warning: 'auto_ptr<rstan::rstan_sample_writer>' is deprecated [-Wdeprecated-declarations]
    std::auto_ptr<rstan_sample_writer> sample_writer_ptr;
         ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../../include/c++/8/backward/auto_ptr.h:287:7: note: 'auto_ptr<rstan::rstan_sample_writer>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../../include/x86_64-linux-gnu/c++/8/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:44:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:17: warning: unused function 'set_zero_all_adjoints' [-Wunused-function]
    static void set_zero_all_adjoints() {
                ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:45:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints_nested.hpp:17:17: warning: 'static' function 'set_zero_all_adjoints_nested' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration]
    static void set_zero_all_adjoints_nested() {
                ^
In file included from file38016c3471f8.cpp:8:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/src/stan/model/model_header.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math.hpp:4:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/rev/mat.hpp:12:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat.hpp:58:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:17:14: warning: function 'fft_next_good_size' is not needed and will not be emitted [-Wunneeded-internal-declaration]
      size_t fft_next_good_size(size_t N) {
             ^
28 warnings generated.
Quitting from lines 181-203 (PFAB.Rmd) 
Error: processing vignette ‘PFAB.Rmd’ failed with diagnostics:
subscript out of bounds
Execution halted