.shapeR.coef.standardize.f: no visible global function definition for
  'aov'
.shapeR.find.outline: no visible global function definition for
  'locator'
.shapeR.find.outline: no visible global function definition for 'lines'
.shapeR.rotate.svd: no visible global function definition for 'var'
.shapeR.standard.coef: no visible global function definition for 'lm'
.shapeR.variation.among : mean.var: no visible binding for global
  variable 'var'
.shapeR.variation.among : mean.var.among: no visible global function
  definition for 'var'
cluster.plot : <anonymous>: no visible global function definition for
  'sd'
cluster.plot: no visible global function definition for 'points'
cluster.plot: no visible global function definition for 'text'
cluster.plot: no visible global function definition for 'qtukey'
detect.outline: no visible global function definition for
  'txtProgressBar'
detect.outline: no visible global function definition for
  'setTxtProgressBar'
estimate.outline.reconstruction: no visible global function definition
  for 'txtProgressBar'
estimate.outline.reconstruction: no visible global function definition
  for 'setTxtProgressBar'
estimate.outline.reconstruction: no visible global function definition
  for 'aggregate'
estimate.outline.reconstruction: no visible binding for global variable
  'sd'
generateShapeCoefficients: no visible global function definition for
  'txtProgressBar'
generateShapeCoefficients: no visible global function definition for
  'setTxtProgressBar'
plotFourier: no visible global function definition for 'par'
plotFourier: no visible binding for global variable 'sd'
plotFourier: no visible global function definition for 'lines'
plotFourier: no visible global function definition for 'axis'
plotFourier: no visible global function definition for 'mtext'
plotFourierShape: no visible global function definition for 'lines'
plotFourierShape: no visible global function definition for 'legend'
plotFourierShape: no visible global function definition for 'abline'
plotFourierShape: no visible global function definition for 'text'
plotWavelet: no visible global function definition for 'par'
plotWavelet: no visible binding for global variable 'sd'
plotWavelet: no visible global function definition for 'axis'
plotWavelet: no visible global function definition for 'mtext'
plotWaveletShape: no visible global function definition for 'lines'
plotWaveletShape: no visible global function definition for 'legend'
plotWaveletShape: no visible global function definition for 'abline'
plotWaveletShape: no visible global function definition for 'text'
read.master.list: no visible global function definition for 'read.csv'
shapeR: no visible global function definition for 'read.csv'
show.original.with.outline: no visible global function definition for
  'par'
write.image.with.outline: no visible global function definition for
  'txtProgressBar'
write.image.with.outline: no visible global function definition for
  'par'
write.image.with.outline: no visible global function definition for
  'png'
write.image.with.outline: no visible global function definition for
  'dev.off'
write.image.with.outline: no visible global function definition for
  'setTxtProgressBar'
Undefined global functions or variables:
  abline aggregate aov axis dev.off legend lines lm locator mtext par
  png points qtukey read.csv sd setTxtProgressBar text txtProgressBar
  var
Consider adding
  importFrom("grDevices", "dev.off", "png")
  importFrom("graphics", "abline", "axis", "legend", "lines", "locator",
             "mtext", "par", "points", "text")
  importFrom("stats", "aggregate", "aov", "lm", "qtukey", "sd", "var")
  importFrom("utils", "read.csv", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.