Error in re-building vignettes:
  ...
Segmenting by CBS...
 Chromosome: 1
 Segmenting multiple segments on current chromosome...
  Number of segments: 3
  Random seed temporarily set (seed=c(48879), kind="L'Ecuyer-CMRG")
  Produced 3 seeds from this stream for future usage
   Segmenting by CBS...
    Chromosome: 1
     Random seed temporarily set (seed=c(407, 1066287653, -51199871, 161854402, -1995183193, 1503453565, -747102133), kind="L'Ecuyer-CMRG")
   Segmenting by CBS...done
   Segmenting by CBS...
    Chromosome: 1
     Random seed temporarily set (seed=c(407, -821273412, -52578226, 1415511586, 721384351, -665928286, 1316562960), kind="L'Ecuyer-CMRG")
   Segmenting by CBS...done
 Segmenting multiple segments on current chromosome...done
Segmenting by CBS...done
Prune segments by hierarchical clustering...
 Clustering arguments:
 List of 4
  $ size        : NULL
  $ distMethod  : chr "euclidean"
  $ hclustMethod: chr "ward.D"
  $ h           : num 0.25
 Clustering...
  Hierarchical clustering of segmented copy numbers...
   Extracting/sampling CNs...
     num [1:9, 1] 1.38 3.19 1.39 NA 2.07 ...
     - attr(*, "dimnames")=List of 2
      ..$ : chr [1:9] "1" "2" "3" "4" ...
      ..$ : chr "mean"
     num [1:8, 1] 1.38 3.19 1.39 2.07 2.71 ...
     - attr(*, "dimnames")=List of 2
      ..$ : chr [1:8] "1" "2" "3" "5" ...
      ..$ : chr "mean"
   Extracting/sampling CNs...done
   Calculating distance matrix...
     'dist' num [1:28] 1.8055 0.0115 0.6858 1.3278 1.2065 ...
     - attr(*, "Size")= int 8
     - attr(*, "Labels")= chr [1:8] "1" "2" "3" "5" ...
     - attr(*, "Diag")= logi FALSE
     - attr(*, "Upper")= logi FALSE
     - attr(*, "method")= chr "euclidean"
     - attr(*, "call")= language stats::dist(x = C, method = distMethod)
   Calculating distance matrix...done
   Clustering...
    List of 7
     $ merge      : int [1:7, 1:2] -1 -6 -5 -2 -4 4 1 -3 -8 2 ...
     $ height     : num [1:7] 0.0115 0.0514 0.1103 0.6868 0.827 ...
     $ order      : int [1:8] 1 3 2 7 4 5 6 8
     $ labels     : chr [1:8] "1" "2" "3" "5" ...
     $ method     : chr "ward.D"
     $ call       : language stats::hclust(d = D, method = hclustMethod)
     $ dist.method: chr "euclidean"
     - attr(*, "class")= chr "hclust"
   Clustering...done
  Hierarchical clustering of segmented copy numbers...done
  
  Call:
  stats::hclust(d = D, method = hclustMethod)
  
  Cluster method   : ward.D 
  Distance         : euclidean 
  Number of objects: 8 
  
 Clustering...done
 Cutting tree...
  Cutting arguments:
  List of 2
   $ tree:List of 7
    ..$ merge      : int [1:7, 1:2] -1 -6 -5 -2 -4 4 1 -3 -8 2 ...
    ..$ height     : num [1:7] 0.0115 0.0514 0.1103 0.6868 0.827 ...
    ..$ order      : int [1:8] 1 3 2 7 4 5 6 8
    ..$ labels     : chr [1:8] "1" "2" "3" "5" ...
    ..$ method     : chr "ward.D"
    ..$ call       : language stats::hclust(d = D, method = hclustMethod)
    ..$ dist.method: chr "euclidean"
    ..- attr(*, "class")= chr "hclust"
   $ h   : num 0.25
   Named int [1:8] 1 2 1 3 4 4 5 4
   - attr(*, "names")= chr [1:8] "1" "2" "3" "5" ...
  List of 5
   $ 1: int [1:2] 1 3
   $ 2: int 2
   $ 3: int 5
   $ 4: int [1:3] 6 7 9
   $ 5: int 8
   - attr(*, "call")= language by.default(data = names(p), INDICES = p, FUN = functio..
   - attr(*, "class")= chr "by"
 Cutting tree...done
 Merging mean levels of clustered segments...
 Merging mean levels of clustered segments...done
 Merging neighboring segments within each cluster...
  Cluster #1 of 5...
   Segments in cluster:
    int [1:2] 1 3
   Left indices of neighboring segments:
    int(0) 
  Cluster #1 of 5...done
  Cluster #2 of 5...
   Segments in cluster:
    int 2
   Left indices of neighboring segments:
    int(0) 
  Cluster #2 of 5...done
  Cluster #3 of 5...
   Segments in cluster:
    int 5
   Left indices of neighboring segments:
    int(0) 
  Cluster #3 of 5...done
  Cluster #4 of 5...
   Segments in cluster:
    int [1:3] 6 7 9
   Left indices of neighboring segments:
    int 6
  Cluster #4 of 5...done
  Cluster #5 of 5...
   Segments in cluster:
    int 8
   Left indices of neighboring segments:
    int(0) 
  Cluster #5 of 5...done
  Left indices of segments to be merged:
   int 6
 Merging neighboring segments within each cluster...done
 Merging segments...
 Merging segments...done
 Updating segment means...
 Updating segment means...done
Prune segments by hierarchical clustering...done
Error: processing vignette ‘CBS.tex.rsp’ failed with diagnostics:
Running ‘texi2dvi’ on ‘CBS.tex’ failed.
LaTeX errors:
! LaTeX Error: Unknown graphics extension: .rsp> PairedPSCBS,exData,chr01,CBS,t
racks.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
! LaTeX Error: Unknown graphics extension: .rsp> PairedPSCBS,exData,chr01,CBS,p
runed,tracks.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
Execution halted