[.comparative.data: no visible global function definition for ‘na.omit’
anova.caic: no visible global function definition for ‘anova’
anova.pgls: no visible global function definition for ‘terms’
anova.pgls: no visible global function definition for ‘as.formula’
anova.pgls: no visible global function definition for ‘pf’
anova.pgls: no visible global function definition for ‘formula’
anova.pglslist : <anonymous>: no visible global function definition for
  ‘terms’
anova.pglslist: no visible global function definition for ‘anova’
anova.pglslist : <anonymous>: no visible global function definition for
  ‘formula’
anova.pglslist: no visible global function definition for ‘stat.anova’
brunch: no visible global function definition for ‘update’
brunch: no visible global function definition for ‘model.frame’
brunch: no visible binding for global variable ‘na.pass’
brunch: no visible global function definition for ‘complete.cases’
brunch: no visible global function definition for ‘model.matrix’
brunch: no visible global function definition for ‘model.response’
brunch: no visible global function definition for ‘is.empty.model’
brunch: no visible global function definition for ‘rstudent’
caic.diagnostics: no visible global function definition for ‘terms’
caic.diagnostics: no visible global function definition for ‘formula’
caic.diagnostics : text.id: no visible global function definition for
  ‘text’
caic.diagnostics: no visible global function definition for ‘lm’
caic.diagnostics: no visible global function definition for
  ‘summary.lm’
caic.diagnostics: no visible global function definition for ‘abline’
caic.robust: no visible global function definition for ‘lm.fit’
caic.robust: no visible binding for global variable ‘formula’
coef.caic: no visible global function definition for ‘coef’
contrCalc: no visible global function definition for ‘reorder’
contrCalc: no visible global function definition for ‘complete.cases’
contrCalc: no visible global function definition for ‘var’
crunch: no visible global function definition for ‘update’
crunch: no visible global function definition for ‘model.frame’
crunch: no visible binding for global variable ‘na.pass’
crunch: no visible global function definition for ‘complete.cases’
crunch: no visible global function definition for ‘model.matrix’
crunch: no visible global function definition for ‘model.response’
crunch: no visible global function definition for ‘is.empty.model’
crunch: no visible global function definition for ‘lm.fit’
crunch: no visible global function definition for ‘rstudent’
fusco.test: no visible global function definition for ‘reorder’
fusco.test: no visible global function definition for ‘median’
fusco.test: no visible global function definition for ‘IQR’
fusco.test : expFun: no visible global function definition for ‘runif’
fusco.test: no visible global function definition for ‘quantile’
growTree : waitTime: no visible global function definition for ‘rexp’
logLik.caic: no visible global function definition for ‘logLik’
macrocaic: no visible global function definition for ‘update’
macrocaic: no visible global function definition for ‘is.empty.model’
macrocaic: no visible global function definition for ‘model.frame’
macrocaic: no visible global function definition for ‘complete.cases’
macrocaic: no visible global function definition for ‘model.response’
macrocaic: no visible binding for global variable ‘na.pass’
macrocaic: no visible global function definition for ‘model.matrix’
macrocaic: no visible global function definition for ‘rstudent’
na.omit.comparative.data: no visible global function definition for
  ‘complete.cases’
nobs.pgls: no visible global function definition for ‘resid’
pgls: no visible global function definition for ‘model.frame’
pgls: no visible binding for global variable ‘na.pass’
pgls: no visible global function definition for ‘model.matrix’
pgls: no visible binding for global variable ‘var’
pgls: no visible global function definition for ‘optim’
pgls.confint: no visible global function definition for ‘qchisq’
pgls.confint: no visible global function definition for ‘pchisq’
pgls.confint: no visible global function definition for ‘uniroot’
phylo.d: no visible binding for global variable ‘quantile’
phylo.d: no visible global function definition for ‘reorder’
plot.caic: no visible global function definition for ‘plot’
plot.fusco: no visible global function definition for ‘hist’
plot.fusco : <anonymous>: no visible global function definition for
  ‘hist’
plot.fusco: no visible global function definition for ‘abline’
plot.fusco: no visible global function definition for ‘median’
plot.pgls: no visible global function definition for ‘residuals’
plot.pgls: no visible global function definition for ‘var’
plot.pgls: no visible global function definition for ‘plot’
plot.pgls: no visible global function definition for ‘density’
plot.pgls: no visible global function definition for ‘qqnorm’
plot.pgls: no visible global function definition for ‘qqline’
plot.pgls: no visible global function definition for ‘fitted’
plot.pgls.profile: no visible global function definition for ‘title’
plot.pgls.profile: no visible global function definition for ‘par’
plot.pgls.profile: no visible global function definition for ‘abline’
plot.phylo.d: no visible global function definition for ‘density’
plot.phylo.d: no visible global function definition for ‘plot’
plot.phylo.d: no visible global function definition for ‘lines’
plot.phylo.d: no visible global function definition for ‘abline’
predict.caic: no visible global function definition for ‘predict’
predict.pgls: no visible global function definition for ‘model.matrix’
predict.pgls: no visible global function definition for
  ‘delete.response’
predict.pgls: no visible global function definition for ‘terms’
predict.pgls: no visible global function definition for ‘formula’
predict.pgls: no visible global function definition for ‘coef’
print.caic: no visible global function definition for ‘na.omit’
print.caic.diagnostics: no visible global function definition for
  ‘printCoefmat’
print.comparative.data: no visible global function definition for ‘str’
print.pgls: no visible global function definition for ‘coef’
print.summary.pgls: no visible global function definition for
  ‘quantile’
print.summary.pgls: no visible global function definition for
  ‘printCoefmat’
print.summary.pgls: no visible global function definition for ‘naprint’
print.summary.pgls: no visible global function definition for ‘pf’
reorder.comparative.data: no visible global function definition for
  ‘packageVersion’
reorder.comparative.data: no visible global function definition for
  ‘reorder’
residuals.caic: no visible global function definition for ‘residuals’
summary.fusco: no visible global function definition for ‘wilcox.test’
summary.pgls: no visible global function definition for ‘pt’
Undefined global functions or variables:
  IQR abline anova as.formula coef complete.cases delete.response
  density fitted formula hist is.empty.model lines lm lm.fit logLik
  median model.frame model.matrix model.response na.omit na.pass
  naprint optim packageVersion par pchisq pf plot predict printCoefmat
  pt qchisq qqline qqnorm quantile reorder resid residuals rexp
  rstudent runif stat.anova str summary.lm terms text title uniroot
  update var wilcox.test
Consider adding
  importFrom("graphics", "abline", "hist", "lines", "par", "plot",
             "text", "title")
  importFrom("stats", "IQR", "anova", "as.formula", "coef",
             "complete.cases", "delete.response", "density", "fitted",
             "formula", "is.empty.model", "lm", "lm.fit", "logLik",
             "median", "model.frame", "model.matrix", "model.response",
             "na.omit", "na.pass", "naprint", "optim", "pchisq", "pf",
             "predict", "printCoefmat", "pt", "qchisq", "qqline",
             "qqnorm", "quantile", "reorder", "resid", "residuals",
             "rexp", "rstudent", "runif", "stat.anova", "summary.lm",
             "terms", "uniroot", "update", "var", "wilcox.test")
  importFrom("utils", "packageVersion", "str")
to your NAMESPACE file.