NB: .First.lib is obsolete and will not be used in R >= 3.0.0

.First.lib: no visible global function definition for
  'packageDescription'
NSAByTotalAndFracB.matrix: no visible global function definition for
  'throw'
NSAByTotalAndFracB.matrix: no visible global function definition for
  'str'
NSANormalization: no visible global function definition for 'throw'
NSANormalization: no visible global function definition for
  'getChipType'
NSANormalization: no visible global function definition for
  'nbrOfFiles'
NSANormalization: no visible global function definition for 'getNames'
NSANormalization: no visible global function definition for 'extend'
NSANormalization: no visible global function definition for 'Object'
NSANormalization: no visible global function definition for 'setTags'
SNPsNormalization: no visible global function definition for 'throw'
SNPsNormalization: no visible global function definition for
  'getChipType'
SNPsNormalization: no visible global function definition for 'getNames'
SNPsNormalization: no visible global function definition for 'extend'
SNPsNormalization: no visible global function definition for 'Object'
SNPsNormalization: no visible global function definition for 'setTags'
SampleNormalization: no visible global function definition for 'throw'
SampleNormalization: no visible global function definition for
  'getChipType'
SampleNormalization: no visible global function definition for
  'nbrOfFiles'
SampleNormalization: no visible global function definition for
  'getNames'
SampleNormalization: no visible global function definition for 'extend'
SampleNormalization: no visible global function definition for 'Object'
SampleNormalization: no visible global function definition for
  'setTags'
allocateOutputDataSets.NSANormalization: no visible global function
  definition for 'getPath'
allocateOutputDataSets.NSANormalization: no visible global function
  definition for 'getName'
allocateOutputDataSets.NSANormalization: no visible global function
  definition for 'getFile'
allocateOutputDataSets.NSANormalization: no visible global function
  definition for 'getPathname'
allocateOutputDataSets.NSANormalization: no visible global function
  definition for 'newInstance'
allocateOutputDataSets.NSANormalization: no visible global function
  definition for 'throw'
allocateOutputDataSets.NSANormalization: no visible global function
  definition for 'byPath'
allocateOutputDataSets.SNPsNormalization: no visible global function
  definition for 'getPath'
allocateOutputDataSets.SNPsNormalization: no visible global function
  definition for 'getName'
allocateOutputDataSets.SNPsNormalization: no visible global function
  definition for 'getFile'
allocateOutputDataSets.SNPsNormalization: no visible global function
  definition for 'nbrOfFiles'
allocateOutputDataSets.SNPsNormalization: no visible global function
  definition for 'getPathname'
allocateOutputDataSets.SNPsNormalization: no visible global function
  definition for 'newInstance'
allocateOutputDataSets.SNPsNormalization: no visible global function
  definition for 'throw'
allocateOutputDataSets.SNPsNormalization: no visible global function
  definition for 'byPath'
allocateOutputDataSets.SNPsNormalization: no visible global function
  definition for 'getPathnames'
allocateOutputDataSets.SampleNormalization: no visible global function
  definition for 'getPath'
allocateOutputDataSets.SampleNormalization: no visible global function
  definition for 'getName'
allocateOutputDataSets.SampleNormalization: no visible global function
  definition for 'getFile'
allocateOutputDataSets.SampleNormalization: no visible global function
  definition for 'nbrOfFiles'
allocateOutputDataSets.SampleNormalization: no visible global function
  definition for 'getPathname'
allocateOutputDataSets.SampleNormalization: no visible global function
  definition for 'newInstance'
allocateOutputDataSets.SampleNormalization: no visible global function
  definition for 'throw'
allocateOutputDataSets.SampleNormalization: no visible global function
  definition for 'byPath'
allocateOutputDataSets.SampleNormalization: no visible global function
  definition for 'getPathnames'
findArraysTodo.NSANormalization: no visible global function definition
  for 'getNames'
findArraysTodo.NSANormalization: no visible global function definition
  for 'getChipType'
findArraysTodo.NSANormalization: no visible binding for global variable
  'AffymetrixCdfFile'
findArraysTodo.NSANormalization: no visible global function definition
  for 'getGenomeInformation'
findArraysTodo.NSANormalization: no visible global function definition
  for 'getUnitsOnChromosome'
findArraysTodo.NSANormalization: no visible global function definition
  for 'getFile'
findArraysTodo.NSANormalization: no visible global function definition
  for 'getName'
findArraysTodo.NSANormalization: no visible global function definition
  for 'str'
findArraysTodo.SampleNormalization: no visible global function
  definition for 'getNames'
findArraysTodo.SampleNormalization: no visible global function
  definition for 'getChipType'
findArraysTodo.SampleNormalization: no visible binding for global
  variable 'AffymetrixCdfFile'
findArraysTodo.SampleNormalization: no visible global function
  definition for 'getGenomeInformation'
findArraysTodo.SampleNormalization: no visible global function
  definition for 'getUnitsOnChromosome'
findArraysTodo.SampleNormalization: no visible global function
  definition for 'getFile'
findArraysTodo.SampleNormalization: no visible global function
  definition for 'getName'
findArraysTodo.SampleNormalization: no visible global function
  definition for 'str'
findUnitsTodo.SNPsNormalization: no visible global function definition
  for 'getFullNames'
findUnitsTodo.SNPsNormalization: no visible global function definition
  for 'str'
findUnitsTodo.SNPsNormalization: no visible global function definition
  for 'getFile'
fitNSA.matrix: no visible binding for global variable 'verbose'
fitNSAcnPs.matrix: no visible global function definition for
  'approxfun'
fitOneNSA: no visible global function definition for 'hist'
fitOneNSA: no visible global function definition for 'CNA'
fitOneNSA: no visible global function definition for 'segment'
fitSNPsN: no visible global function definition for 'rowMedians'
fitSample: no visible global function definition for 'median'
getFullName.NSANormalization: no visible global function definition for
  'getName'
getFullName.NSANormalization: no visible global function definition for
  'getTags'
getFullName.SNPsNormalization: no visible global function definition
  for 'getName'
getFullName.SNPsNormalization: no visible global function definition
  for 'getTags'
getFullName.SampleNormalization: no visible global function definition
  for 'getName'
getFullName.SampleNormalization: no visible global function definition
  for 'getTags'
getName.NSANormalization: no visible global function definition for
  'getName'
getName.SNPsNormalization: no visible global function definition for
  'getName'
getName.SampleNormalization: no visible global function definition for
  'getName'
getPath.NSANormalization: no visible global function definition for
  'getRootPath'
getPath.NSANormalization: no visible global function definition for
  'getFullName'
getPath.NSANormalization: no visible global function definition for
  'getChipType'
getPath.NSANormalization: no visible global function definition for
  'getPath'
getPath.NSANormalization: no visible global function definition for
  'throw'
getPath.SNPsNormalization: no visible global function definition for
  'getRootPath'
getPath.SNPsNormalization: no visible global function definition for
  'getFullName'
getPath.SNPsNormalization: no visible global function definition for
  'getChipType'
getPath.SNPsNormalization: no visible global function definition for
  'getPath'
getPath.SNPsNormalization: no visible global function definition for
  'throw'
getPath.SampleNormalization: no visible global function definition for
  'getRootPath'
getPath.SampleNormalization: no visible global function definition for
  'getFullName'
getPath.SampleNormalization: no visible global function definition for
  'getChipType'
getPath.SampleNormalization: no visible global function definition for
  'getPath'
getPath.SampleNormalization: no visible global function definition for
  'throw'
getTags.NSANormalization: no visible global function definition for
  'getTags'
getTags.NSANormalization: no visible global function definition for
  'getAsteriskTags'
getTags.SNPsNormalization: no visible global function definition for
  'getTags'
getTags.SNPsNormalization: no visible global function definition for
  'getAsteriskTags'
getTags.SampleNormalization: no visible global function definition for
  'getTags'
getTags.SampleNormalization: no visible global function definition for
  'getAsteriskTags'
nbrOfFiles.NSANormalization: no visible global function definition for
  'nbrOfFiles'
nbrOfFiles.SNPsNormalization: no visible global function definition for
  'nbrOfFiles'
nbrOfFiles.SampleNormalization: no visible global function definition
  for 'nbrOfFiles'
process.NSANormalization: no visible global function definition for
  'getChipType'
process.NSANormalization: no visible binding for global variable
  'AffymetrixCdfFile'
process.NSANormalization: no visible global function definition for
  'getGenomeInformation'
process.NSANormalization: no visible global function definition for
  'throw'
process.NSANormalization: no visible global function definition for
  'getRam'
process.NSANormalization: no visible binding for global variable
  'aromaSettings'
process.NSANormalization: no visible global function definition for
  'getNames'
process.NSANormalization: no visible global function definition for
  'getPath'
process.NSANormalization: no visible global function definition for
  'getFile'
process.NSANormalization: no visible global function definition for
  'getName'
process.NSANormalization: no visible global function definition for
  'getUnitsOnChromosome'
process.NSANormalization: no visible global function definition for
  'getPositions'
process.NSANormalization: no visible global function definition for
  'str'
process.SNPsNormalization: no visible global function definition for
  'throw'
process.SNPsNormalization: no visible global function definition for
  'getNames'
process.SNPsNormalization: no visible global function definition for
  'getFile'
process.SNPsNormalization: no visible global function definition for
  'findUnitsTodo'
process.SNPsNormalization: no visible global function definition for
  'getRam'
process.SNPsNormalization: no visible binding for global variable
  'aromaSettings'
process.SNPsNormalization: no visible global function definition for
  'str'
process.SNPsNormalization: no visible global function definition for
  'getChipType'
process.SNPsNormalization: no visible global function definition for
  'getPath'
process.SNPsNormalization: no visible global function definition for
  'extractMatrix'
process.SNPsNormalization: no visible global function definition for
  'getName'
process.SNPsNormalization: no visible global function definition for
  'getFullNames'
process.SampleNormalization: no visible global function definition for
  'getChipType'
process.SampleNormalization: no visible binding for global variable
  'AffymetrixCdfFile'
process.SampleNormalization: no visible global function definition for
  'getGenomeInformation'
process.SampleNormalization: no visible global function definition for
  'throw'
process.SampleNormalization: no visible global function definition for
  'getNames'
process.SampleNormalization: no visible global function definition for
  'getRam'
process.SampleNormalization: no visible binding for global variable
  'aromaSettings'
process.SampleNormalization: no visible global function definition for
  'getPath'
process.SampleNormalization: no visible global function definition for
  'getFile'
process.SampleNormalization: no visible global function definition for
  'getName'
process.SampleNormalization: no visible global function definition for
  'str'
sampleNByTotalAndFracB.numeric: no visible global function definition
  for 'throw'
sampleNByTotalAndFracB.numeric: no visible global function definition
  for 'str'
setTags.NSANormalization: no visible global function definition for
  'trim'
setTags.SNPsNormalization: no visible global function definition for
  'trim'
setTags.SampleNormalization: no visible global function definition for
  'trim'
snpsNByTotalAndFracB.matrix: no visible global function definition for
  'throw'
snpsNByTotalAndFracB.matrix: no visible global function definition for
  'str'
snpsNByTotalAndFracB.matrix: no visible global function definition for
  'rowAlls'
Undefined global functions or variables:
  AffymetrixCdfFile CNA Object approxfun aromaSettings byPath extend
  extractMatrix findUnitsTodo getAsteriskTags getChipType getFile
  getFullName getFullNames getGenomeInformation getName getNames
  getPath getPathname getPathnames getPositions getRam getRootPath
  getTags getUnitsOnChromosome hist median nbrOfFiles newInstance
  packageDescription rowAlls rowMedians segment setTags str throw trim
  verbose
Consider adding
  importFrom("graphics", "hist")
  importFrom("stats", "approxfun", "median")
  importFrom("utils", "packageDescription", "str")
to your NAMESPACE file.