Error in re-building vignettes:
  ...
Loading required package: GMD
Warning in heatmap.3(x, dendrogram = "both", cexCol = 0.85, cexRow = 0.85) :
  Discrepancy: row dendrogram is asked;  Rowv is set to `TRUE'.
Warning in heatmap.3(x, dendrogram = "both", cexCol = 0.85, cexRow = 0.85) :
  Discrepancy: col dendrogram is asked;  Colv is set to `TRUE'.
Warning in heatmap.3(x, dendrogram = "both", cexCol = 0.85, cexRow = 0.85) :
  Discrepancy: row dendrogram is asked; cluster.by.row is set to `TRUE'.
Warning in heatmap.3(x, dendrogram = "both", cexCol = 0.85, cexRow = 0.85) :
  Discrepancy: col dendrogram is asked; cluster.by.col is set to `TRUE'.
heatmap.3 | From GMD 0.3.3, please use relative values for cexRow.
heatmap.3 | From GMD 0.3.3, please use relative values for cexCol.
The "ward" method has been renamed to "ward.D"; note new "ward.D2"
Warning in plot.window(...) : "cex.text" is not a graphical parameter
Warning in plot.window(...) :
  "if.plot.new" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
  plot type ‘polygon’ will be truncated to first character
Warning in plot.xy(xy, type, ...) :
  "cex.text" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
  "if.plot.new" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "cex.text" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "if.plot.new" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "cex.text" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
  "if.plot.new" is not a graphical parameter
Warning in box(...) : "cex.text" is not a graphical parameter
Warning in box(...) : "if.plot.new" is not a graphical parameter
Warning in title(...) : "cex.text" is not a graphical parameter
Warning in title(...) : "if.plot.new" is not a graphical parameter

Error: processing vignette ‘GMD-vignette.Rnw’ failed with diagnostics:
 chunk 6 
Error in xy.coords(x, y, xlabel, ylabel, log) : 
  'x' is a list, but does not have components 'x' and 'y'
Execution halted