Ell: no visible global function definition for 'dist'
boxroc: no visible global function definition for 'dist'
boxroc: no visible global function definition for 'par'
boxroc: no visible global function definition for 'boxplot'
boxroc: no visible global function definition for 'abline'
boxroc: no visible global function definition for 'matplot'
boxroc: no visible global function definition for 'legend'
frEZ: no visible binding for global variable 'sd'
goflsm: no visible global function definition for 'plot'
lsjm: no visible global function definition for 'rnorm'
lsjm : <anonymous>: no visible global function definition for
  'cmdscale'
lsjm : <anonymous>: no visible global function definition for 'as.dist'
lsjm : <anonymous>: no visible binding for global variable 'sd'
lsjm: no visible global function definition for 'glm'
lsm: no visible global function definition for 'rbinom'
lsm: no visible global function definition for 'rnorm'
lsm: no visible binding for global variable 'sd'
lsm: no visible global function definition for 'cmdscale'
lsm: no visible global function definition for 'as.dist'
lsm: no visible global function definition for 'glm'
mainLSM: no visible global function definition for 'dist'
plot.gofobj: no visible global function definition for 'par'
plot.gofobj: no visible binding for global variable 'quantile'
plot.gofobj: no visible global function definition for 'boxplot'
plot.gofobj: no visible global function definition for 'matlines'
plot.gofobj: no visible global function definition for 'matpoints'
plot.gofobj: no visible global function definition for 'lines'
plot.gofobj: no visible global function definition for 'points'
plot.gofobj: no visible global function definition for 'mtext'
plot.lsjm: no visible global function definition for 'rgb'
plot.lsjm: no visible global function definition for 'par'
plot.lsm: no visible global function definition for 'rgb'
plotY: no visible global function definition for 'rgb'
plotY: no visible global function definition for 'plot'
plotY: no visible global function definition for 'polygon'
plotY: no visible global function definition for 'points'
plotY: no visible global function definition for 'text'
restartlsm: no visible global function definition for 'rnorm'
restartlsm: no visible binding for global variable 'sd'
restartlsm: no visible global function definition for 'cmdscale'
restartlsm: no visible global function definition for 'as.dist'
restartlsm: no visible global function definition for 'glm'
simulateLSM: no visible global function definition for 'rnorm'
simulateLSM: no visible global function definition for 'dist'
simulateLSM: no visible global function definition for 'rbinom'
upSigmaT: no visible global function definition for 'combn'
Undefined global functions or variables:
  abline as.dist boxplot cmdscale combn dist glm legend lines matlines
  matplot matpoints mtext par plot points polygon quantile rbinom rgb
  rnorm sd text
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("graphics", "abline", "boxplot", "legend", "lines",
             "matlines", "matplot", "matpoints", "mtext", "par", "plot",
             "points", "polygon", "text")
  importFrom("stats", "as.dist", "cmdscale", "dist", "glm", "quantile",
             "rbinom", "rnorm", "sd")
  importFrom("utils", "combn")
to your NAMESPACE file.