Running ‘testthat.R’ [19s/163s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(biomartr)
  > 
  > test_check("biomartr")
  trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/archaea/assembly_summary.txt'
  Content type 'unknown' length 231433 bytes (226 KB)
  ==================================================
  trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/bacteria/assembly_summary.txt'
  Content type 'unknown' length 32599280 bytes (31.1 MB)
  ==================================================
  trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/fungi/assembly_summary.txt'
  Content type 'unknown' length 80596 bytes (78 KB)
  ==================================================
  trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/invertebrate/assembly_summary.txt'
  Content type 'unknown' length 50852 bytes (49 KB)
  ==================================================
  trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary.txt'
  Content type 'unknown' length 32702 bytes (31 KB)
  ==================================================
  trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/protozoa/assembly_summary.txt'
  Content type 'unknown' length 25649 bytes (25 KB)
  ==================================================
  trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/assembly_summary.txt'
  Content type 'unknown' length 36006 bytes (35 KB)
  ==================================================
  trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_other/assembly_summary.txt'
  Content type 'unknown' length 40643 bytes (39 KB)
  ==================================================
  trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/assembly_summary.txt'
  Content type 'unknown' length 2248547 bytes (2.1 MB)
  ==================================================
  ── 1. Error: The getENSEMBLInfo() interface works properly.. (@test-getENSEMBLIn
  The API 'http://rest.ensembl.org' does not seem to
                  work properly. Are you connected to the internet?
                  Is the homepage 'http://rest.ensembl.org' currently available?
  1: getENSEMBLInfo() at testthat/test-getENSEMBLInfo.R:6
  2: get.ensembl.info(update = TRUE)
  3: tryCatch({
         ensembl.info <- tibble::as_tibble(jsonlite::fromJSON("http://rest.ensembl.org/info/species?content-type=application/json")$species)
     }, error = function(e) stop("The API 'http://rest.ensembl.org' does not seem to\n                work properly. Are you connected to the internet?\n                Is the homepage 'http://rest.ensembl.org' currently available?", 
         call. = FALSE))
  4: tryCatchList(expr, classes, parentenv, handlers)
  5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  6: value[[3L]](cond)
  7: stop("The API 'http://rest.ensembl.org' does not seem to\n                work properly. Are you connected to the internet?\n                Is the homepage 'http://rest.ensembl.org' currently available?", 
         call. = FALSE)
  
  trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/GENOME_REPORTS/overview.txt'
  Content type 'unknown' length 3188426 bytes (3.0 MB)
  ==================================================
  trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/metagenomes/assembly_summary.txt'
  Content type 'unknown' length 2023013 bytes (1.9 MB)
  ==================================================
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 5 SKIPPED: 60 FAILED: 1
  1. Error: The getENSEMBLInfo() interface works properly.. (@test-getENSEMBLInfo.R#6) 
  
  Error: testthat unit tests failed
  Execution halted