Error in re-building vignettes:
  ...
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/vignetteData/fortran/functionsCode.f95 -o /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/vignetteData/fortran/functionsCode.o
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpAw2SyA/rodeo6dd21d35eb61.f95 -o /tmp/RtmpAw2SyA/rodeo6dd21d35eb61.o
/tmp/RtmpAw2SyA/rodeo6dd21d35eb61.f95:65:39:

   double precision, dimension(NVAR*NBOX), intent(in):: var
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpAw2SyA/rodeo6dd21d35eb61.f95:66:39:

   double precision, dimension(NPAR*NBOX), intent(in):: par
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpAw2SyA/rodeo6dd21d35eb61.f95:59:20:

 subroutine drvs(time, var, par, NBOX, dydt, pro)
                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpAw2SyA/rodeo6dd256e34b44.f95 -o /tmp/RtmpAw2SyA/rodeo6dd256e34b44.o
gfortran-7 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o /tmp/RtmpAw2SyA/rodeo6dd2500a448e.so /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/vignetteData/fortran/functionsCode.o /tmp/RtmpAw2SyA/rodeo6dd21d35eb61.o /tmp/RtmpAw2SyA/rodeo6dd256e34b44.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpAw2SyA/rodeo6dd257c9b314.f95 -o /tmp/RtmpAw2SyA/rodeo6dd257c9b314.o
/tmp/RtmpAw2SyA/rodeo6dd257c9b314.f95:83:39:

   double precision, dimension(NVAR*NBOX), intent(in):: var
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpAw2SyA/rodeo6dd257c9b314.f95:84:39:

   double precision, dimension(NPAR*NBOX), intent(in):: par
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpAw2SyA/rodeo6dd257c9b314.f95:77:20:

 subroutine drvs(time, var, par, NBOX, dydt, pro)
                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpAw2SyA/rodeo6dd215de9ea8.f95 -o /tmp/RtmpAw2SyA/rodeo6dd215de9ea8.o
gfortran-7 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o /tmp/RtmpAw2SyA/rodeo6dd236d2f757.so /tmp/RtmpAw2SyA/rodeo6dd257c9b314.o /tmp/RtmpAw2SyA/rodeo6dd215de9ea8.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpAw2SyA/rodeo6dd232818c8f.f95 -o /tmp/RtmpAw2SyA/rodeo6dd232818c8f.o
/tmp/RtmpAw2SyA/rodeo6dd232818c8f.f95:59:39:

   double precision, dimension(NVAR*NBOX), intent(in):: var
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpAw2SyA/rodeo6dd232818c8f.f95:60:39:

   double precision, dimension(NPAR*NBOX), intent(in):: par
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpAw2SyA/rodeo6dd232818c8f.f95:53:20:

 subroutine drvs(time, var, par, NBOX, dydt, pro)
                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpAw2SyA/rodeo6dd24455820e.f95 -o /tmp/RtmpAw2SyA/rodeo6dd24455820e.o
gfortran-7 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o /tmp/RtmpAw2SyA/rodeo6dd27a6f3538.so /tmp/RtmpAw2SyA/rodeo6dd232818c8f.o /tmp/RtmpAw2SyA/rodeo6dd24455820e.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.f95 -o /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.o
/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.f95:14:20:

   function cDn (time) result (r)
                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.f95:8:20:

   function cUp (time) result (r)
                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpAw2SyA/rodeo6dd292c03.f95 -o /tmp/RtmpAw2SyA/rodeo6dd292c03.o
/tmp/RtmpAw2SyA/rodeo6dd292c03.f95:64:39:

   double precision, dimension(NVAR*NBOX), intent(in):: var
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpAw2SyA/rodeo6dd292c03.f95:65:39:

   double precision, dimension(NPAR*NBOX), intent(in):: par
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpAw2SyA/rodeo6dd24058916d.f95 -o /tmp/RtmpAw2SyA/rodeo6dd24058916d.o
gfortran-7 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o /tmp/RtmpAw2SyA/rodeo6dd271d7d085.so /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.o /tmp/RtmpAw2SyA/rodeo6dd292c03.o /tmp/RtmpAw2SyA/rodeo6dd24058916d.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.f95 -o /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.o
/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.f95:23:38:

   double precision function hRiv (time)
                                      1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.f95:18:37:

   double precision function rch (time)
                                     1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpAw2SyA/rodeo6dd255a91b86.f95 -o /tmp/RtmpAw2SyA/rodeo6dd255a91b86.o
/tmp/RtmpAw2SyA/rodeo6dd255a91b86.f95:70:39:

   double precision, dimension(NVAR*NBOX), intent(in):: var
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpAw2SyA/rodeo6dd255a91b86.f95:71:39:

   double precision, dimension(NPAR*NBOX), intent(in):: par
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpAw2SyA/rodeo6dd27746583e.f95 -o /tmp/RtmpAw2SyA/rodeo6dd27746583e.o
gfortran-7 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o /tmp/RtmpAw2SyA/rodeo6dd2103aca34.so /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.o /tmp/RtmpAw2SyA/rodeo6dd255a91b86.o /tmp/RtmpAw2SyA/rodeo6dd27746583e.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/tetracycline/functions.f95 -o /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/tetracycline/functions.o
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpAw2SyA/rodeo6dd263ccf774.f95 -o /tmp/RtmpAw2SyA/rodeo6dd263ccf774.o
/tmp/RtmpAw2SyA/rodeo6dd263ccf774.f95:165:39:

   double precision, dimension(NVAR*NBOX), intent(in):: var
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpAw2SyA/rodeo6dd263ccf774.f95:166:39:

   double precision, dimension(NPAR*NBOX), intent(in):: par
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpAw2SyA/rodeo6dd263ccf774.f95:159:20:

 subroutine drvs(time, var, par, NBOX, dydt, pro)
                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpAw2SyA/rodeo6dd26bf7be6d.f95 -o /tmp/RtmpAw2SyA/rodeo6dd26bf7be6d.o
gfortran-7 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o /tmp/RtmpAw2SyA/rodeo6dd2b6ffa49.so /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/tetracycline/functions.o /tmp/RtmpAw2SyA/rodeo6dd263ccf774.o /tmp/RtmpAw2SyA/rodeo6dd26bf7be6d.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95 -o /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o
/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:18:18:

 function sInf(time) result (res)
                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:12:18:

 function xInf(time) result (res)
                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:6:15:

 function q(time) result (res)
               1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpAw2SyA/rodeo6dd26cc9ced6.f95 -o /tmp/RtmpAw2SyA/rodeo6dd26cc9ced6.o
/tmp/RtmpAw2SyA/rodeo6dd26cc9ced6.f95:80:39:

   double precision, dimension(NVAR*NBOX), intent(in):: var
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpAw2SyA/rodeo6dd26cc9ced6.f95:81:39:

   double precision, dimension(NPAR*NBOX), intent(in):: par
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpAw2SyA/rodeo6dd2cc56d38.f95 -o /tmp/RtmpAw2SyA/rodeo6dd2cc56d38.o
gfortran-7 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o /tmp/RtmpAw2SyA/rodeo6dd279f043fa.so /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o /tmp/RtmpAw2SyA/rodeo6dd26cc9ced6.o /tmp/RtmpAw2SyA/rodeo6dd2cc56d38.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
gfortran-7  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rodeo/fortran/integrators.f95 -o /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rodeo/fortran/integrators.o
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rodeo/fortran/integrators.f95:269:11:

 integer:: i
           1
Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rodeo/fortran/integrators.f95:301:0:

   if (abs(hnext) .lt. hmin) then
 
Warning: ‘hnext’ may be used uninitialized in this function [-Wmaybe-uninitialized]
Assembler messages:
Fatal error: can't create /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rodeo/fortran/integrators.o: Read-only file system
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/etc/Makeconf:185: recipe for target '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rodeo/fortran/integrators.o' failed
make[1]: *** [/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rodeo/fortran/integrators.o] Error 1
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
make[1]: Entering directory '/tmp/RtmpAw2SyA'
make[1]: Leaving directory '/tmp/RtmpAw2SyA'
Quitting from lines 1371-1371 (rodeoVignette.Rmd) 
Error: processing vignette ‘rodeoVignette.Rmd’ failed with diagnostics:
Failed to build shared library.
Execution halted