Error in re-building vignettes:
  ...
Loading required package: ape

Retrieving data for taxon 'Struthioniformes'


Retrieving data for taxon 'Tinamiformes'


Retrieving data for taxon 'Craciformes'


Retrieving data for taxon 'Galliformes'


Retrieving data for taxon 'Anseriformes'


Retrieving data for taxon 'Turniciformes'


Retrieving data for taxon 'Piciformes'


Retrieving data for taxon 'Galbuliformes'


Retrieving data for taxon 'Bucerotiformes'


Retrieving data for taxon 'Upupiformes'


Retrieving data for taxon 'Trogoniformes'


Retrieving data for taxon 'Coraciiformes'


Retrieving data for taxon 'Coliiformes'


Retrieving data for taxon 'Cuculiformes'


Retrieving data for taxon 'Psittaciformes'


Retrieving data for taxon 'Apodiformes'


Retrieving data for taxon 'Trochiliformes'


Retrieving data for taxon 'Musophagiformes'


Retrieving data for taxon 'Strigiformes'


Retrieving data for taxon 'Columbiformes'


Retrieving data for taxon 'Gruiformes'


Retrieving data for taxon 'Ciconiiformes'


Retrieving data for taxon 'Passeriformes'


Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union


Retrieving data for taxon 'Allenopithecus_nigroviridis'


Retrieving data for taxon 'Allocebus_trichotis'


Retrieving data for taxon 'Alouatta_belzebul'


Retrieving data for taxon 'Alouatta_caraya'


Retrieving data for taxon 'Alouatta_coibensis'

Not found. Consider checking the spelling or alternate classification
Warning in taxize_nexml(.) :
  ID for otu Alouatta_coibensis not found. Consider checking the spelling or alternate classification

Retrieving data for taxon 'Alouatta_fusca'


Retrieving data for taxon 'Alouatta_palliata'


Retrieving data for taxon 'Alouatta_pigra'


Retrieving data for taxon 'Alouatta_sara'


Retrieving data for taxon 'Alouatta_seniculus'


Retrieving data for taxon 'Aotus_azarai'


Retrieving data for taxon 'Aotus_brumbacki'


Retrieving data for taxon 'Aotus_hershkovitzi'

Not found. Consider checking the spelling or alternate classification
Warning in taxize_nexml(.) :
  ID for otu Aotus_hershkovitzi not found. Consider checking the spelling or alternate classification

Retrieving data for taxon 'Aotus_infulatus'


Retrieving data for taxon 'Aotus_lemurinus'


Retrieving data for taxon 'Aotus_miconax'

Not found. Consider checking the spelling or alternate classification
Warning in taxize_nexml(.) :
  ID for otu Aotus_miconax not found. Consider checking the spelling or alternate classification

Retrieving data for taxon 'Aotus_nancymaae'


Retrieving data for taxon 'Aotus_nigriceps'


Retrieving data for taxon 'Aotus_trivirgatus'


Retrieving data for taxon 'Aotus_vociferans'


Retrieving data for taxon 'Arctocebus_aureus'


Retrieving data for taxon 'Arctocebus_calabarensis'


Retrieving data for taxon 'Ateles_belzebuth'


Retrieving data for taxon 'Ateles_chamek'


Retrieving data for taxon 'Ateles_fusciceps'


Retrieving data for taxon 'Ateles_geoffroyi'


Retrieving data for taxon 'Ateles_marginatus'


Retrieving data for taxon 'Ateles_paniscus'


Retrieving data for taxon 'Avahi_laniger'


Retrieving data for taxon 'Brachyteles_arachnoides'


Retrieving data for taxon 'Cacajao_calvus'


Retrieving data for taxon 'Cacajao_melanocephalus'


Retrieving data for taxon 'Callicebus_brunneus'


Retrieving data for taxon 'Callicebus_caligatus'


Retrieving data for taxon 'Callicebus_cinerascens'


Retrieving data for taxon 'Callicebus_cupreus'


Retrieving data for taxon 'Callicebus_donacophilus'


Retrieving data for taxon 'Callicebus_dubius'


Retrieving data for taxon 'Callicebus_hoffmannsi'


Retrieving data for taxon 'Callicebus_modestus'

Not found. Consider checking the spelling or alternate classification
Warning in taxize_nexml(.) :
  ID for otu Callicebus_modestus not found. Consider checking the spelling or alternate classification

Retrieving data for taxon 'Callicebus_moloch'


Retrieving data for taxon 'Callicebus_oenanthe'

Not found. Consider checking the spelling or alternate classification
Warning in taxize_nexml(.) :
  ID for otu Callicebus_oenanthe not found. Consider checking the spelling or alternate classification

Retrieving data for taxon 'Callicebus_olallae'

Not found. Consider checking the spelling or alternate classification
Warning in taxize_nexml(.) :
  ID for otu Callicebus_olallae not found. Consider checking the spelling or alternate classification

Retrieving data for taxon 'Callicebus_personatus'


Retrieving data for taxon 'Callicebus_torquatus'


Retrieving data for taxon 'Callimico_goeldii'


Retrieving data for taxon 'Callithrix_argentata'


Retrieving data for taxon 'Callithrix_aurita'


Retrieving data for taxon 'Callithrix_flaviceps'


Retrieving data for taxon 'Callithrix_geoffroyi'


Retrieving data for taxon 'Callithrix_humeralifera'


Retrieving data for taxon 'Callithrix_jacchus'


Retrieving data for taxon 'Callithrix_kuhlii'


Retrieving data for taxon 'Callithrix_penicillata'


Retrieving data for taxon 'Callithrix_pygmaea'


Retrieving data for taxon 'Cebus_albifrons'


Retrieving data for taxon 'Cebus_apella'


Retrieving data for taxon 'Cebus_capucinus'


Retrieving data for taxon 'Cebus_olivaceus'


Retrieving data for taxon 'Cercocebus_agilis'


Retrieving data for taxon 'Cercocebus_galeritus'


Retrieving data for taxon 'Cercocebus_torquatus'


Retrieving data for taxon 'Cercopithecus_ascanius'


Retrieving data for taxon 'Cercopithecus_campbelli'


Retrieving data for taxon 'Cercopithecus_cephus'


Retrieving data for taxon 'Cercopithecus_diana'


Retrieving data for taxon 'Cercopithecus_dryas'


Retrieving data for taxon 'Cercopithecus_erythrogaster'


Retrieving data for taxon 'Cercopithecus_erythrotis'


Retrieving data for taxon 'Cercopithecus_hamlyni'


Retrieving data for taxon 'Cercopithecus_lhoesti'


Retrieving data for taxon 'Cercopithecus_mitis'


Retrieving data for taxon 'Cercopithecus_mona'


Retrieving data for taxon 'Cercopithecus_neglectus'


Retrieving data for taxon 'Cercopithecus_nictitans'


Retrieving data for taxon 'Cercopithecus_petaurista'


Retrieving data for taxon 'Cercopithecus_pogonias'


Retrieving data for taxon 'Cercopithecus_preussi'


Retrieving data for taxon 'Cercopithecus_sclateri'


Retrieving data for taxon 'Cercopithecus_solatus'


Retrieving data for taxon 'Cercopithecus_wolfi'


Retrieving data for taxon 'Cheirogaleus_major'


Retrieving data for taxon 'Cheirogaleus_medius'


Retrieving data for taxon 'Chiropotes_albinasus'


Retrieving data for taxon 'Chiropotes_satanas'


Retrieving data for taxon 'Chlorocebus_aethiops'


Retrieving data for taxon 'Colobus_angolensis'


Retrieving data for taxon 'Colobus_guereza'


Retrieving data for taxon 'Colobus_polykomos'


Retrieving data for taxon 'Colobus_satanas'


Retrieving data for taxon 'Daubentonia_madagascariensis'


Retrieving data for taxon 'Erythrocebus_patas'


Retrieving data for taxon 'Eulemur_coronatus'


Retrieving data for taxon 'Eulemur_fulvus'


Retrieving data for taxon 'Eulemur_macaco'


Retrieving data for taxon 'Eulemur_mongoz'


Retrieving data for taxon 'Eulemur_rubriventer'


Retrieving data for taxon 'Euoticus_elegantulus'


Retrieving data for taxon 'Euoticus_pallidus'

Not found. Consider checking the spelling or alternate classification
Warning in taxize_nexml(.) :
  ID for otu Euoticus_pallidus not found. Consider checking the spelling or alternate classification

Retrieving data for taxon 'Galago_alleni'


Retrieving data for taxon 'Galago_gallarum'


Retrieving data for taxon 'Galago_matschiei'


Retrieving data for taxon 'Galago_moholi'


Retrieving data for taxon 'Galago_senegalensis'


Retrieving data for taxon 'Galagoides_demidoff'


Retrieving data for taxon 'Galagoides_zanzibaricus'


Retrieving data for taxon 'Gorilla_gorilla'

Quitting from lines 207-211 (metadata.Rmd) 
Error: processing vignette ‘metadata.Rmd’ failed with diagnostics:
xmlParseEntityRef: no name [68]
Execution halted