Error in re-building vignettes:
  ...
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/vignetteData/fortran/functionsCode.f95 -o /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/vignetteData/fortran/functionsCode.o
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpvtCmIv/rodeo64842d074b12.f95 -o /tmp/RtmpvtCmIv/rodeo64842d074b12.o
/tmp/RtmpvtCmIv/rodeo64842d074b12.f95:65:39:

   double precision, dimension(NVAR*NBOX), intent(in):: var
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpvtCmIv/rodeo64842d074b12.f95:66:39:

   double precision, dimension(NPAR*NBOX), intent(in):: par
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpvtCmIv/rodeo64842d074b12.f95:59:20:

 subroutine drvs(time, var, par, NBOX, dydt, pro)
                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpvtCmIv/rodeo64844e91261c.f95 -o /tmp/RtmpvtCmIv/rodeo64844e91261c.o
gfortran-6 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o /tmp/RtmpvtCmIv/rodeo64842c851083.so /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/vignetteData/fortran/functionsCode.o /tmp/RtmpvtCmIv/rodeo64842d074b12.o /tmp/RtmpvtCmIv/rodeo64844e91261c.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpvtCmIv/rodeo64841815fa70.f95 -o /tmp/RtmpvtCmIv/rodeo64841815fa70.o
/tmp/RtmpvtCmIv/rodeo64841815fa70.f95:83:39:

   double precision, dimension(NVAR*NBOX), intent(in):: var
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpvtCmIv/rodeo64841815fa70.f95:84:39:

   double precision, dimension(NPAR*NBOX), intent(in):: par
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpvtCmIv/rodeo64841815fa70.f95:77:20:

 subroutine drvs(time, var, par, NBOX, dydt, pro)
                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpvtCmIv/rodeo64841ffa8d00.f95 -o /tmp/RtmpvtCmIv/rodeo64841ffa8d00.o
gfortran-6 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o /tmp/RtmpvtCmIv/rodeo648434e46723.so /tmp/RtmpvtCmIv/rodeo64841815fa70.o /tmp/RtmpvtCmIv/rodeo64841ffa8d00.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpvtCmIv/rodeo648472921f84.f95 -o /tmp/RtmpvtCmIv/rodeo648472921f84.o
/tmp/RtmpvtCmIv/rodeo648472921f84.f95:59:39:

   double precision, dimension(NVAR*NBOX), intent(in):: var
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpvtCmIv/rodeo648472921f84.f95:60:39:

   double precision, dimension(NPAR*NBOX), intent(in):: par
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpvtCmIv/rodeo648472921f84.f95:53:20:

 subroutine drvs(time, var, par, NBOX, dydt, pro)
                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpvtCmIv/rodeo64841d5e2600.f95 -o /tmp/RtmpvtCmIv/rodeo64841d5e2600.o
gfortran-6 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o /tmp/RtmpvtCmIv/rodeo64846f4686f8.so /tmp/RtmpvtCmIv/rodeo648472921f84.o /tmp/RtmpvtCmIv/rodeo64841d5e2600.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.f95 -o /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.o
/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.f95:14:20:

   function cDn (time) result (r)
                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.f95:8:20:

   function cUp (time) result (r)
                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpvtCmIv/rodeo648423cccdab.f95 -o /tmp/RtmpvtCmIv/rodeo648423cccdab.o
/tmp/RtmpvtCmIv/rodeo648423cccdab.f95:64:39:

   double precision, dimension(NVAR*NBOX), intent(in):: var
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpvtCmIv/rodeo648423cccdab.f95:65:39:

   double precision, dimension(NPAR*NBOX), intent(in):: par
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpvtCmIv/rodeo64845372a932.f95 -o /tmp/RtmpvtCmIv/rodeo64845372a932.o
gfortran-6 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o /tmp/RtmpvtCmIv/rodeo64841164150e.so /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.o /tmp/RtmpvtCmIv/rodeo648423cccdab.o /tmp/RtmpvtCmIv/rodeo64845372a932.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.f95 -o /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.o
/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.f95:23:38:

   double precision function hRiv (time)
                                      1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.f95:18:37:

   double precision function rch (time)
                                     1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpvtCmIv/rodeo6484730bbe92.f95 -o /tmp/RtmpvtCmIv/rodeo6484730bbe92.o
/tmp/RtmpvtCmIv/rodeo6484730bbe92.f95:70:39:

   double precision, dimension(NVAR*NBOX), intent(in):: var
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpvtCmIv/rodeo6484730bbe92.f95:71:39:

   double precision, dimension(NPAR*NBOX), intent(in):: par
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpvtCmIv/rodeo64844ff6bc17.f95 -o /tmp/RtmpvtCmIv/rodeo64844ff6bc17.o
gfortran-6 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o /tmp/RtmpvtCmIv/rodeo64843508b6d0.so /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.o /tmp/RtmpvtCmIv/rodeo6484730bbe92.o /tmp/RtmpvtCmIv/rodeo64844ff6bc17.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/tetracycline/functions.f95 -o /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/tetracycline/functions.o
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpvtCmIv/rodeo648470d55449.f95 -o /tmp/RtmpvtCmIv/rodeo648470d55449.o
/tmp/RtmpvtCmIv/rodeo648470d55449.f95:165:39:

   double precision, dimension(NVAR*NBOX), intent(in):: var
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpvtCmIv/rodeo648470d55449.f95:166:39:

   double precision, dimension(NPAR*NBOX), intent(in):: par
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpvtCmIv/rodeo648470d55449.f95:159:20:

 subroutine drvs(time, var, par, NBOX, dydt, pro)
                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpvtCmIv/rodeo6484629d2a08.f95 -o /tmp/RtmpvtCmIv/rodeo6484629d2a08.o
gfortran-6 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o /tmp/RtmpvtCmIv/rodeo648425d8c737.so /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/tetracycline/functions.o /tmp/RtmpvtCmIv/rodeo648470d55449.o /tmp/RtmpvtCmIv/rodeo6484629d2a08.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95 -o /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o
/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:18:18:

 function sInf(time) result (res)
                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:12:18:

 function xInf(time) result (res)
                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:6:15:

 function q(time) result (res)
               1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpvtCmIv/rodeo648415e1ff31.f95 -o /tmp/RtmpvtCmIv/rodeo648415e1ff31.o
/tmp/RtmpvtCmIv/rodeo648415e1ff31.f95:80:39:

   double precision, dimension(NVAR*NBOX), intent(in):: var
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpvtCmIv/rodeo648415e1ff31.f95:81:39:

   double precision, dimension(NPAR*NBOX), intent(in):: par
                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /tmp/RtmpvtCmIv/rodeo64844635df0e.f95 -o /tmp/RtmpvtCmIv/rodeo64844635df0e.o
gfortran-6 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o /tmp/RtmpvtCmIv/rodeo648464ef0e1e.so /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o /tmp/RtmpvtCmIv/rodeo648415e1ff31.o /tmp/RtmpvtCmIv/rodeo64844635df0e.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
gfortran-6  -fpic -g -O2 -Wall -pedantic -mtune=native -c  /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rodeo/fortran/integrators.f95 -o /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rodeo/fortran/integrators.o
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rodeo/fortran/integrators.f95:269:11:

 integer:: i
           1
Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable]
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rodeo/fortran/integrators.f95:301:0:

   if (abs(hnext) .lt. hmin) then
 
Warning: ‘hnext’ may be used uninitialized in this function [-Wmaybe-uninitialized]
Assembler messages:
Fatal error: can't create /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rodeo/fortran/integrators.o: Read-only file system
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/etc/Makeconf:185: recipe for target '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rodeo/fortran/integrators.o' failed
make[1]: *** [/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rodeo/fortran/integrators.o] Error 1
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
make[1]: Entering directory '/tmp/RtmpvtCmIv'
make[1]: Leaving directory '/tmp/RtmpvtCmIv'
Quitting from lines 1371-1371 (rodeoVignette.Rmd) 
Error: processing vignette ‘rodeoVignette.Rmd’ failed with diagnostics:
Failed to build shared library.
Execution halted