DPfitSamples: no visible global function definition for 'mclapply'
DPfitSamples: no visible global function definition for 'na.omit'
SampleNMM : nmm: no visible global function definition for 'dchisq'
SampleNMM : nmm: no visible global function definition for 'dnorm'
SampleNMM: no visible global function definition for 'optim'
SampleNMM: no visible global function definition for 'dchisq'
SampleNMM: no visible global function definition for 'dnorm'
getAGP: no visible global function definition for 'na.omit'
getBAFmean: no visible global function definition for 'quantile'
getBAFmean: no visible global function definition for 'density'
getBAFmean: no visible global function definition for 'nls'
getCCF: no visible global function definition for 'mclapply'
getCCF: no visible global function definition for 'write.table'
getCanonicalLines: no visible global function definition for 'lm'
getDPfit: no visible global function definition for 'pchisq'
getDiploidOrigin: no visible global function definition for 'mclapply'
getHets: no visible global function definition for 'runif'
getKmeans: no visible global function definition for 'kmeans'
getOrigin: no visible global function definition for 'weighted.mean'
getPloidy: no visible global function definition for 'weighted.mean'
getSampleAGP: no visible global function definition for 'png'
getSampleAGP: no visible global function definition for 'dev.off'
getSampleAGP: no visible global function definition for 'quantile'
getSampleAGP: no visible global function definition for 'var'
getSampleCCF: no visible global function definition for 'read.table'
getSampleCCF: no visible global function definition for 'quantile'
getSampleCCF : computeSD: no visible global function definition for
  'dbinom'
getSampleCCF: no visible global function definition for 'pbeta'
getSeg: no visible global function definition for 'read.table'
getSegChr: no visible global function definition for 'median'
getSegChr: no visible global function definition for 'na.omit'
getSegChr.CBS : foo: no visible global function definition for 'median'
getSegChr.CBS: no visible global function definition for 'mclapply'
getSegChr.CBS: no visible global function definition for 'na.omit'
getSegPurity: no visible global function definition for 'par'
getSegPurity: no visible global function definition for 'plot'
getSegPurity: no visible global function definition for 'abline'
getSegPurity: no visible global function definition for 'points'
getSegPurity : foo: no visible global function definition for 'lines'
getSegPurity : foo: no visible global function definition for 'gray'
getSegPurity : foo: no visible global function definition for 'points'
getSegPurity: no visible global function definition for 'mclapply'
getSegPurity: no visible global function definition for 'title'
getsAGP: no visible global function definition for 'read.table'
getsAGP: no visible global function definition for 'na.omit'
getsAGP: no visible global function definition for 'runif'
plotBAFLRR: no visible global function definition for 'plot'
plotBAFLRR: no visible global function definition for 'abline'
plotBAFLRR: no visible global function definition for 'points'
plotBAFLRR: no visible global function definition for 'lines'
plotIdentifiableZone: no visible global function definition for 'rgb'
plotIdentifiableZone: no visible global function definition for 'par'
plotIdentifiableZone: no visible global function definition for 'plot'
plotIdentifiableZone: no visible global function definition for
  'polygon'
plotIdentifiableZone: no visible global function definition for 'lines'
plotIdentifiableZone: no visible global function definition for
  'segments'
Undefined global functions or variables:
  abline dbinom dchisq density dev.off dnorm gray kmeans lines lm
  mclapply median na.omit nls optim par pbeta pchisq plot png points
  polygon quantile read.table rgb runif segments title var
  weighted.mean write.table
Consider adding
  importFrom("grDevices", "dev.off", "gray", "png", "rgb")
  importFrom("graphics", "abline", "lines", "par", "plot", "points",
             "polygon", "segments", "title")
  importFrom("stats", "dbinom", "dchisq", "density", "dnorm", "kmeans",
             "lm", "median", "na.omit", "nls", "optim", "pbeta",
             "pchisq", "quantile", "runif", "var", "weighted.mean")
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.