Rd file 'estimate_differential_expression.Rd':
  \examples lines wider than 100 characters:
     cat("Mark = ",output$gp_comparison[[1,1,2]]$mark," Test Statistic with Generalized Poisson Model = ", output$gp_comparison[[1,1,2]]$Gpt ... [TRUNCATED]

Rd file 'estimate_differential_splicing.Rd':
  \examples lines wider than 100 characters:
     cat("Mark = ",output$out_gp[[2,1,1,2]]$mark," Test Statistic with Generalized Poisson Model = ", output$out_gp[[2,1,1,2]]$Gptest,"\n");

Rd file 'estimate_exon_gene_expression.Rd':
  \examples lines wider than 100 characters:
     cat("Mark = ",output$exon_out[[1,1]]$mark," Theta = ",output$exon_out[[1,1]]$theta," Lambda = ",output$exon_out[[1,1]]$lambda," y_bar = ... [TRUNCATED]
     cat("Mark = ",output$chisq_exon_out[[1,1]]$mark1," Degrees of Freedom = ",output$chisq_exon_out[[1,1]]$df1," Chi Square Statistic ",out ... [TRUNCATED]
     cat("Mark = ",output$chisq_exon_out[[1,1]]$mark2," Degrees of Freedom = ",output$chisq_exon_out[[1,1]]$df2," Chi Square Statistic ",out ... [TRUNCATED]
     cat("Mark = ",output$gene_out[[1,1]]$mark," Theta = ",output$gene_out[[1,1]]$theta," Lambda = ",output$gene_out[[1,1]]$lambda," y_bar = ... [TRUNCATED]
     cat("Mark = ",output$chisq_gene_out[[1,1]]$mark1," Degrees of Freedom = ",output$chisq_gene_out[[1,1]]$df1," Chi Square Statistic ",out ... [TRUNCATED]
     cat("Mark = ",output$chisq_gene_out[[1,1]]$mark2," Degrees of Freedom = ",output$chisq_gene_out[[1,1]]$df2," Chi Square Statistic ",out ... [TRUNCATED]

Rd file 'generalized_poisson_likelihood.Rd':
  \examples lines wider than 100 characters:
       cat("theta = ",out$theta,"lambda = ",out$lambda,"lambda_poisson = ",out$y_bar,"Length = ",out$length,"\n");

Rd file 'likelihood_ratio_generalized_poisson_exon_gene.Rd':
  \usage lines wider than 90 characters:
     likelihood_ratio_generalized_poisson_exon_gene(z, theta1, lambda1, x, theta2, lambda2, v, theta3, lambda3, y, theta4, lambda4)
  \examples lines wider than 100 characters:
       output = likelihood_ratio_generalized_poisson_exon_gene(z,outz$theta,outz$lambda,x,outx$theta,outx$lambda,v,outv$theta,outv$lambda,y, ... [TRUNCATED]

Rd file 'likelihood_ratio_tissue_generalized_poisson.Rd':
  \examples lines wider than 100 characters:
     output = likelihood_ratio_tissue_generalized_poisson(x,outx$lambda,outx$theta,y,outy$lambda,outy$theta,w);

These lines will be truncated in the PDF manual.