Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(stringr)
  > library(io)
  Loading required package: filenamer
  > 
  > test_check("io")
  HDF5-DIAG: Error detected in HDF5 (1.8.19) thread 0:
    #000: H5L.c line 1181 in H5Literate(): link iteration failed
      major: Symbol table
      minor: Iteration failed
    #001: H5Gint.c line 833 in H5G_iterate(): unable to register group
      major: Object atom
      minor: Unable to register new atom
    #002: H5I.c line 880 in H5I_register(): invalid type
      major: Object atom
      minor: Unable to find ID group information
  ── 1. Error: (unknown) (@test_read-write-read.R#8)  ────────────────────────────
  evaluation nested too deeply: infinite recursion / options(expressions=)?
  1: test_read_write_read(f) at testthat/test_read-write-read.R:8
  2: qread(outfile) at /data/gannet/ripley/R/packages/tests-devel/io.Rcheck/tests/testthat/helper.R:49
  3: .qread(file, if (is.null(type)) .infer_file_type(file) else type, ...)
  4: qread.hdf5(file, if (is.null(type)) .infer_file_type(file) else type, ...)
  5: trimws(rhdf5::h5ls(file)$name)
  6: mysub("[ \t\r\n]+$", mysub("^[ \t\r\n]+", x))
  7: sub(re, "", x, perl = TRUE)
  8: mysub("^[ \t\r\n]+", x)
  9: sub(re, "", x, perl = TRUE)
  10: rhdf5::h5ls(file)
  ...
  618: h5lsConvertToDataframe(L[[i]], all = all)
  619: h5lsConvertToDataframe(L[[i]], all = all)
  620: h5lsConvertToDataframe(L[[i]], all = all)
  621: h5lsConvertToDataframe(L[[i]], all = all)
  622: h5lsConvertToDataframe(L[[i]], all = all)
  623: h5lsConvertToDataframe(L[[i]], all = all)
  624: h5lsConvertToDataframe(L[[i]], all = all)
  625: h5lsConvertToDataframe(L[[i]], all = all)
  626: h5lsConvertToDataframe(L[[i]], all = all)
  627: h5lsConvertToDataframe(L[[i]], all = all)
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 0 SKIPPED: 0 FAILED: 1
  1. Error: (unknown) (@test_read-write-read.R#8) 
  
  Error: testthat unit tests failed
  Execution halted