ANNOTATE.run: no visible global function definition for 'read.table'
BONFERRONI.run: no visible global function definition for 'write.table'
CALCPDIFF.run: no visible global function definition for 'cor.test'
CALCPDIFF.run: no visible global function definition for 'pnorm'
CALCPHET.run: no visible global function definition for 'pchisq'
CLUMP.run: no visible global function definition for 'write.table'
CLUMP.run: no visible global function definition for 'na.omit'
EASYMERGE.init: no visible global function definition for 'read.table'
EASYMERGE.read: no visible global function definition for 'read.table'
EASYMERGE.read.10rows: no visible global function definition for
  'read.table'
EVALSTAT.run: no visible global function definition for 'median'
EVALSTAT.run: no visible global function definition for 'quantile'
EVALSTAT.run: no visible global function definition for 'sd'
EXTRACTSNPS.run: no visible global function definition for 'read.table'
EasyX: no visible global function definition for 'dev.cur'
EasyX: no visible global function definition for 'dev.off'
EasyX.run: no visible global function definition for 'dev.cur'
EasyX.run: no visible global function definition for 'write.table'
FDR.run: no visible global function definition for 'p.adjust'
GC.run: no visible global function definition for 'qchisq'
GC.run: no visible global function definition for 'read.table'
GC.run: no visible global function definition for 'median'
GC.run: no visible global function definition for 'pchisq'
GWADATA.init: no visible global function definition for 'read.table'
GWADATA.read: no visible global function definition for 'read.table'
GWADATA.read.10rows: no visible global function definition for
  'read.table'
GWADATA.write: no visible global function definition for 'write.table'
INDEP.run: no visible global function definition for 'na.omit'
JOINTTEST.run: no visible global function definition for 'pchisq'
METAANALYSIS.run: no visible global function definition for 'pchisq'
METAANALYSIS.run: no visible global function definition for 'pnorm'
MHPLOT.GWADATA.valid: no visible global function definition for
  'colors'
MHPLOT.GWADATA.valid: no visible global function definition for
  'read.table'
MHPLOT.run: no visible global function definition for 'read.table'
MHPLOT.run: no visible global function definition for 'plot'
MHPLOT.run: no visible global function definition for 'axis'
MHPLOT.run: no visible global function definition for 'mtext'
MHPLOT.run: no visible global function definition for 'abline'
MHPLOT.run: no visible global function definition for 'grid'
MIAMIPLOT.GWADATA.valid: no visible global function definition for
  'colors'
MIAMIPLOT.GWADATA.valid: no visible global function definition for
  'read.table'
MIAMIPLOT.run: no visible global function definition for 'read.table'
MIAMIPLOT.run: no visible global function definition for 'plot'
MIAMIPLOT.run: no visible global function definition for 'points'
MIAMIPLOT.run: no visible global function definition for 'mtext'
MIAMIPLOT.run: no visible global function definition for 'axis'
MIAMIPLOT.run: no visible global function definition for 'abline'
MIAMIPLOT.run: no visible global function definition for 'grid'
QQPLOT.run: no visible global function definition for 'par'
QQPLOT.run: no visible global function definition for 'qbeta'
QQPLOT.run: no visible global function definition for 'plot'
QQPLOT.run: no visible global function definition for 'points'
QQPLOT.run: no visible global function definition for 'axis'
QQPLOT.run: no visible global function definition for 'abline'
QQPLOT.run: no visible global function definition for 'read.table'
QQPLOT.run: no visible global function definition for 'legend'
REPORT.write: no visible global function definition for 'write.table'
RPLOT.run: no visible global function definition for 'plot'
RPLOT.run: no visible global function definition for 'text'
RPLOT.run: no visible global function definition for 'par'
RPLOT.run: no visible global function definition for 'grid'
RPLOT.run: no visible global function definition for 'legend'
SPLOT.run: no visible global function definition for 'plot'
SPLOT.run: no visible global function definition for 'text'
SPLOT.run: no visible global function definition for 'par'
SPLOT.run: no visible global function definition for 'arrows'
SPLOT.run: no visible global function definition for 'points'
SPLOT.run: no visible global function definition for 'grid'
SPLOT.run: no visible global function definition for 'abline'
SPLOT.run: no visible global function definition for 'legend'
fnAddMultiPng: no visible global function definition for 'dev.set'
fnAddMultiPng: no visible global function definition for 'dev.list'
fnAddPlot: no visible global function definition for 'dev.set'
fnAddPlot: no visible global function definition for 'dev.list'
fnCloseMultiPng: no visible global function definition for 'dev.off'
fnClosePlot: no visible global function definition for 'dev.off'
fnOpenMultiPlot: no visible global function definition for 'par'
fnOpenMultiPng: no visible global function definition for 'par'
fnOpenPlot: no visible global function definition for 'par'
fnOpenPng.Boxplot: no visible global function definition for 'par'
fnOpenPng.MH: no visible global function definition for 'par'
fnOpenPng.Miami: no visible global function definition for 'par'
validANNOTATE: no visible global function definition for 'read.table'
validEXTRACTSNPS: no visible global function definition for
  'read.table'
validQQPLOT: no visible global function definition for 'read.table'
validRPLOT: no visible global function definition for 'colors'
validSPLOT: no visible global function definition for 'colors'
Undefined global functions or variables:
  abline arrows axis colors cor.test dev.cur dev.list dev.off dev.set
  grid legend median mtext na.omit p.adjust par pchisq plot pnorm
  points qbeta qchisq quantile read.table sd text write.table
Consider adding
  importFrom("grDevices", "colors", "dev.cur", "dev.list", "dev.off",
             "dev.set")
  importFrom("graphics", "abline", "arrows", "axis", "grid", "legend",
             "mtext", "par", "plot", "points", "text")
  importFrom("stats", "cor.test", "median", "na.omit", "p.adjust",
             "pchisq", "pnorm", "qbeta", "qchisq", "quantile", "sd")
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.