.binomial.pd: no visible global function definition for 'dbinom'
.edge.children.var: no visible global function definition for
  'aggregate'
.edge.children.var.ub: no visible global function definition for
  'reorder'
.edge.children.var.ub: no visible global function definition for
  'aggregate'
.evolve.trait: no visible global function definition for 'reorder'
.evolve.trait: no visible global function definition for 'rnorm'
.evolve.trait: no visible global function definition for 'runif'
.evolve.trait: no visible global function definition for 'rlnorm'
.evolve.trait: no visible global function definition for 'par'
.evolve.trait: no visible global function definition for 'dist'
.evolve.trait: no visible global function definition for 'rainbow'
.evolve.trait: no visible global function definition for 'plot'
.evolve.trait: no visible global function definition for 'lines'
.phylosor.richness: no visible global function definition for 'as.dist'
Kcalc: no visible global function definition for 'coef'
color.plot.phylo: no visible global function definition for 'rainbow'
color.plot.phylo: no visible global function definition for 'par'
color.plot.phylo: no visible global function definition for 'title'
color.plot.phylo: no visible global function definition for 'legend'
comdist: no visible global function definition for 'as.dist'
comdistnt: no visible global function definition for 'weighted.mean'
comdistnt: no visible global function definition for 'as.dist'
comm.phylo.cor: no visible global function definition for 'as.dist'
comm.phylo.cor: no visible global function definition for 'cophenetic'
comm.phylo.cor: no visible global function definition for 'cor'
comm.phylo.cor: no visible global function definition for 'cor.test'
comm.phylo.qr: no visible global function definition for 'as.dist'
comm.phylo.qr: no visible global function definition for 'cophenetic'
comm.phylo.qr: no visible global function definition for 'coef'
comm.phylo.qr: no visible global function definition for 'rq'
comm.phylo.qr: no visible binding for global variable 'na.omit'
comm.phylo.qr: no visible global function definition for 'plot'
comm.phylo.qr: no visible global function definition for 'abline'
comm.phylo.qr: no visible global function definition for 'legend'
cor.table: no visible global function definition for 'cor'
cor.table: no visible global function definition for 'pt'
ead: no visible global function definition for 'reorder'
ead: no visible global function definition for 'aggregate'
expected.pd: no visible global function definition for 'dbinom'
match.comm.dist: no visible global function definition for 'as.dist'
mntd: no visible global function definition for 'weighted.mean'
mpd: no visible global function definition for 'weighted.mean'
pblm: no visible global function definition for 'model.matrix'
pblm: no visible global function definition for 'cov'
pblm: no visible global function definition for 'is'
pblm: no visible global function definition for 'optim'
pblm: no visible global function definition for 'quantile'
pblmpredict: no visible global function definition for 'cor'
pblmpredict: no visible global function definition for 'is'
pcd: no visible global function definition for 'is'
pcd: no visible global function definition for 'as.dist'
phylosignal: no visible global function definition for 'sd'
phylosor: no visible global function definition for 'as.dist'
phylostruct: no visible binding for global variable 'quantile'
phylostruct: no visible global function definition for 'quantile'
prune.missing: no visible global function definition for 'na.omit'
psc: no visible global function definition for 'is'
pse: no visible global function definition for 'is'
psv: no visible global function definition for 'is'
psv.spp: no visible global function definition for 'is'
raoD: no visible global function definition for 'cophenetic'
readsample: no visible global function definition for 'read.table'
ses.mntd: no visible binding for global variable 'sd'
ses.mpd: no visible binding for global variable 'sd'
ses.pd: no visible binding for global variable 'sd'
specaccum.psr: no visible binding for global variable 'sd'
species.dist: no visible global function definition for 'as.dist'
species.dist: no visible global function definition for 'dist'
sppregs: no visible global function definition for 'is'
sppregs: no visible global function definition for 'glm'
sppregs: no visible global function definition for 'cor'
sppregs: no visible global function definition for 'brglm'
sppregs.plot: no visible global function definition for 'par'
sppregs.plot: no visible global function definition for 'plot'
sppregs.plot: no visible global function definition for 'cor'
sppregs.plot: no visible global function definition for 'abline'
traitgram: no visible global function definition for 'par'
traitgram: no visible global function definition for 'plot'
traitgram: no visible global function definition for 'axis'
traitgram: no visible global function definition for 'segments'
traitgram: no visible global function definition for 'text'
unifrac: no visible global function definition for 'as.dist'
writesample: no visible global function definition for 'write.table'
writetraits: no visible global function definition for 'write.table'
Undefined global functions or variables:
  abline aggregate as.dist axis brglm coef cophenetic cor cor.test cov
  dbinom dist glm is legend lines model.matrix na.omit optim par plot
  pt quantile rainbow read.table reorder rlnorm rnorm rq runif sd
  segments text title weighted.mean write.table
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "abline", "axis", "legend", "lines", "par",
             "plot", "segments", "text", "title")
  importFrom("methods", "is")
  importFrom("stats", "aggregate", "as.dist", "coef", "cophenetic",
             "cor", "cor.test", "cov", "dbinom", "dist", "glm",
             "model.matrix", "na.omit", "optim", "pt", "quantile",
             "reorder", "rlnorm", "rnorm", "runif", "sd",
             "weighted.mean")
  importFrom("utils", "read.table", "write.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').