Error in re-building vignettes:
  ...
Warning in buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-clang/RcppArmadillo.Rcheck/vign_test/RcppArmadillo") :
  Files named as vignettes but with no recognized vignette engine:
   ‘vignettes/RcppArmadillo-sparseMatrix.Rnw’
(Is a VignetteBuilder field missing?)
Loading required package: RcppArmadillo
Error in rmultinom(n, size, prob) : NA in probability vector
Error in rmultinomC(n, size, prob) : NAs not allowed in probability
Error in rmultinom(n, size, prob) : no positive probabilities
Error in rmultinomC(n, size, prob) : Not enough positive probabilities
Error : Only CSC, COO and CSR matrices from SciPy are supported.
dimnames(.) <- NULL:  translated to 
dimnames(.) <- list(NULL,NULL)  <==>  unname(.)
dimnames(.) <- NULL:  translated to 
dimnames(.) <- list(NULL,NULL)  <==>  unname(.)
*** Error in `/data/gannet/ripley/R/R-clang/bin/exec/R': double free or corruption (fasttop): 0x000000000926e020 ***
======= Backtrace: =========
/lib64/libc.so.6(+0x7c8dc)[0x7fa8df94a8dc]
/lib64/libc.so.6(+0x87789)[0x7fa8df955789]
/lib64/libc.so.6(cfree+0x16e)[0x7fa8df95b0ee]
/tmp/RtmpqVpRjz/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_628565b96a78/sourceCpp_18.so(_Z29rcpp_exception_to_r_conditionRKN4Rcpp9exceptionE+0x31d)[0x7fa8c5c8663d]
/tmp/RtmpqVpRjz/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_628565b96a78/sourceCpp_18.so(sourceCpp_17_asSpMat+0x221)[0x7fa8c5c82871]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x49516d]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4977e5]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x574)[0x4c82a4]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4d87b2]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f0)[0x4c8320]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4d6e40]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3ff)[0x4c812f]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4d6e40]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4e1337]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4cae53]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4d87b2]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f0)[0x4c8320]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4d6e40]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4e1337]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4cae53]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4d6e40]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4e1337]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4cae53]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4d6e40]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4e1337]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4cae53]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4d6e40]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4e1337]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4cae53]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4d6e40]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4e1337]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4cae53]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4d87b2]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4cc1f1]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4d87b2]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4cc1f1]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4d87b2]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4cc1f1]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4d87b2]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4cc1f1]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4d87b2]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f0)[0x4c8320]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4d6e40]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4e1337]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4cae53]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x18e)[0x4c7ebe]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4d87b2]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f0)[0x4c8320]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4d6f48]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x47b)[0x4c81ab]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4d9548]
/data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x327)[0x4c8057]
/data/gannet/ripley/R/R-clang/bin/exec/R[0x4daa0f]
======= Memory map: ========
00400000-006a8000 r-xp 00000000 fd:02 3670516                            /data/gannet/ripley/R/R-clang/bin/exec/R
008a7000-008a8000 r--p 002a7000 fd:02 3670516                            /data/gannet/ripley/R/R-clang/bin/exec/R
008a8000-008b3000 rw-p 002a8000 fd:02 3670516                            /data/gannet/ripley/R/R-clang/bin/exec/R
008b3000-00a04000 rw-p 00000000 00:00 0 
0280c000-0b078000 rw-p 00000000 00:00 0                                  [heap]
7fa8c5c78000-7fa8c5ca2000 r-xp 00000000 00:2b 591096630                  /tmp/RtmpqVpRjz/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_628565b96a78/sourceCpp_18.so
7fa8c5ca2000-7fa8c5ea1000 ---p 0002a000 00:2b 591096630                  /tmp/RtmpqVpRjz/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_628565b96a78/sourceCpp_18.so
7fa8c5ea1000-7fa8c5ea2000 r--p 00029000 00:2b 591096630                  /tmp/RtmpqVpRjz/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_628565b96a78/sourceCpp_18.so
7fa8c5ea2000-7fa8c5ea3000 rw-p 0002a000 00:2b 591096630                  /tmp/RtmpqVpRjz/sourceCpp-x86_64-pc-linux-gnu-0.12.13/sourcecpp_628565b96a78/sourceCpp_18.so
7fa8c5ea3000-7fa8c5ee3000 rw-p 00000000 00:00 0 
7fa8c5ee3000-7fa8c5f28000 r-xp 00000000 fd:01 1081351                    /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_reordering.so
7fa8c5f28000-7fa8c6128000 ---p 00045000 fd:01 1081351                    /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_reordering.so
7fa8c6128000-7fa8c6129000 r--p 00045000 fd:01 1081351                    /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_reordering.so
7fa8c6129000-7fa8c612d000 rw-p 00046000 fd:01 1081351                    /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_reordering.so
7fa8c612d000-7fa8c612e000 rw-p 00000000 00:00 0 
7fa8c612e000-7fa8c6155000 r-xp 00000000 fd:01 1081350                    /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_min_spanning_tree.so
7fa8c6155000-7fa8c6355000 ---p 00027000 fd:01 1081350                    /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_min_spanning_tree.so
7fa8c6355000-7fa8c6356000 r--p 00027000 fd:01 1081350                    /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_min_spanning_tree.so
7fa8c6356000-7fa8c6359000 rw-p 00028000 fd:01 1081350                    /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_min_spanning_tree.so
7fa8c6359000-7fa8c637a000 r-xp 00000000 fd:01 1081354                    /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_traversal.so
7fa8c637a000-7fa8c6579000 ---p 00021000 fd:01 1081354                    /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_traversal.so
7fa8c6579000-7fa8c657a000 r--p 00020000 fd:01 1081354                    /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_traversal.so
7fa8c657a000-7fa8c657e000 rw-p 00021000 fd:01 1081354                    /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_traversal.so
7fa8c657e000-7fa8c65a0000 r-xp 00000000 fd:01 1119423                    /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_tools.so
7fa8c65a0000-7fa8c679f000 ---p 00022000 fd:01 1119423                    /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_tools.so
7fa8c679f000-7fa8c67a0000 r--p 00021000 fd:01 1119423                    /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_tools.so
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7fa8c67a4000-7fa8c67d9000 r-xp 00000000 fd:01 1081353                    /usr/lib64/python2.7/site-packages/scipy/sparse/csgraph/_shortest_path.so
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7fa8c95af000-7fa8c95ef000 rw-p 00000000 00:00 0 
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7fa8c9608000-7fa8c9808000 ---p 00019000 fd:01 843277                     /usr/lib64/python2.7/lib-dynload/_ctypes.so
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7fa8e260e000-7fa8e260f000 r--p 00000000 fd:01 800350                     /usr/share/locale/en_GB/LC_MESSAGES/libc.mo
7fa8e260f000-7fa8e261f000 rwxp 00000000 00:00 0 
7fa8e261f000-7fa8e2620000 r--p 00000000 fd:02 3672944                    /data/gannet/ripley/R/R-clang/library/translations/en/LC_MESSAGES/R.mo
7fa8e2620000-7fa8e2621000 r--p 00000000 fd:02 3673089                    /data/gannet/ripley/R/R-clang/library/translations/en_GB/LC_MESSAGES/R.mo
7fa8e2621000-7fa8e2628000 r--s 00000000 fd:01 812834                     /usr/lib64/gconv/gconv-modules.cache
7fa8e2628000-7fa8e262a000 rw-p 00000000 00:00 0 
7fa8e262a000-7fa8e262b000 r--p 00026000 fd:01 787472                     /usr/lib64/ld-2.25.so
7fa8e262b000-7fa8e262d000 rw-p 00027000 fd:01 787472                     /usr/lib64/ld-2.25.so
7ffd74328000-7ffd7437a000 rw-p 00000000 00:00 0                          [stack]
7ffd743e9000-7ffd743ec000 r--p 00000000 00:00 0                          [vvar]
7ffd743ec000-7ffd743ee000 r-xp 00000000 00:00 0                          [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0                  [vsyscall]