Running 'PairedPSCBS,boot.R' [10s]
  Running 'findLargeGaps.R' [2s]
  Running 'randomSeed.R' [2s]
  Running 'segmentByCBS,calls.R' [0s]
  Running 'segmentByCBS,futures.R' [17s]
  Running 'segmentByCBS,median.R' [6s]
  Running 'segmentByCBS,prune.R' [5s]
  Running 'segmentByCBS,report.R' [0s]
  Running 'segmentByCBS,shiftTCN.R' [29s]
  Running 'segmentByCBS,weights.R' [10s]
  Running 'segmentByCBS.R' [13s]
  Running 'segmentByNonPairedPSCBS,medianDH.R' [11s]
  Running 'segmentByPairedPSCBS,DH.R' [9s]
  Running 'segmentByPairedPSCBS,calls.R' [11s]
  Running 'segmentByPairedPSCBS,futures.R' [26s]
  Running 'segmentByPairedPSCBS,noNormalBAFs.R' [9s]
  Running 'segmentByPairedPSCBS,report.R' [0s]
  Running 'segmentByPairedPSCBS,seqOfSegmentsByDP.R' [17s]
  Running 'segmentByPairedPSCBS.R' [15s]
Running the tests in 'tests/segmentByNonPairedPSCBS,medianDH.R' failed.
Last 13 lines of output:
  > deltaAB <- estimateDeltaAB(fit, flavor="qq(DH)", verbose=-10)
  Estimating DH threshold for calling allelic imbalances...
   flavor: qq(DH)
   scale: 1
   Estimating DH threshold for AB caller...
    quantile #1: 0.05
    Symmetric quantile #2: 0.9
    Number of segments: 6
  Error in inDL(x, as.logical(local), as.logical(now), ...) : 
    unable to load shared object 'D:/temp/Rtmp00D1Mk/RLIBS_308b83c0619d0/checkmate/libs/x64/checkmate.dll':
    LoadLibrary failure:  Die angegebene Prozedur wurde nicht gefunden.
  Calls: estimateDeltaAB ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
   Estimating DH threshold for AB caller...done
  Estimating DH threshold for calling allelic imbalances...done
  Execution halted
Running the tests in 'tests/segmentByPairedPSCBS,DH.R' failed.
Last 13 lines of output:
  3         1311        1311 0.2512 0.9862070 1.647893
  > plotTracks(fit)
  > 
  > 
  > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
  > # Calling segments in allelic balance (AB) and
  > # in loss-of-heterozygosity (LOH)
  > # NOTE: Ideally, this should be done on whole-genome data
  > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
  > fit <- callAB(fit, verbose=-10)
  Error in inDL(x, as.logical(local), as.logical(now), ...) : 
    unable to load shared object 'D:/temp/Rtmp00D1Mk/RLIBS_308b83c0619d0/checkmate/libs/x64/checkmate.dll':
    LoadLibrary failure:  Die angegebene Prozedur wurde nicht gefunden.
  Calls: callAB ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
  Execution halted
Running the tests in 'tests/segmentByPairedPSCBS,calls.R' failed.
Last 13 lines of output:
  > deltaAB <- estimateDeltaAB(fit, flavor="qq(DH)", verbose=-10)
  Estimating DH threshold for calling allelic imbalances...
   flavor: qq(DH)
   scale: 1
   Estimating DH threshold for AB caller...
    quantile #1: 0.05
    Symmetric quantile #2: 0.9
    Number of segments: 3
  Error in inDL(x, as.logical(local), as.logical(now), ...) : 
    unable to load shared object 'D:/temp/Rtmp00D1Mk/RLIBS_308b83c0619d0/checkmate/libs/x64/checkmate.dll':
    LoadLibrary failure:  Die angegebene Prozedur wurde nicht gefunden.
  Calls: estimateDeltaAB ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
   Estimating DH threshold for AB caller...done
  Estimating DH threshold for calling allelic imbalances...done
  Execution halted
Running the tests in 'tests/segmentByPairedPSCBS,noNormalBAFs.R' failed.
Last 13 lines of output:
  3         1311        1311 0.2512 0.9862070 1.647893
  > plotTracks(fit)
  > 
  > 
  > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
  > # Calling segments in allelic balance (AB) and
  > # in loss-of-heterozygosity (LOH)
  > # NOTE: Ideally, this should be done on whole-genome data
  > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
  > fit <- callAB(fit, verbose=-10)
  Error in inDL(x, as.logical(local), as.logical(now), ...) : 
    unable to load shared object 'D:/temp/Rtmp00D1Mk/RLIBS_308b83c0619d0/checkmate/libs/x64/checkmate.dll':
    LoadLibrary failure:  Die angegebene Prozedur wurde nicht gefunden.
  Calls: callAB ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
  Execution halted