Running 'RC.R' [3s]
  Comparing 'RC.Rout' to 'RC.Rout.save' ...26,34d25
< Warning messages:
< 1: In setCoefs - ref %*% setCoefs :
<   Recycling array of length 1 in vector-array arithmetic is deprecated.
<   Use c() or as.vector() instead.
< 
< 2: In setCoefs - scaleRef %*% setCoefs :
<   Recycling array of length 1 in vector-array arithmetic is deprecated.
<   Use c() or as.vector() instead.
< 
38,46d28
< Warning messages:
< 1: In setCoefs - ref %*% setCoefs :
<   Recycling array of length 1 in vector-array arithmetic is deprecated.
<   Use c() or as.vector() instead.
< 
< 2: In setCoefs - scaleRef %*% setCoefs :
<   Recycling array of length 1 in vector-array arithmetic is deprecated.
<   Use c() or as.vector() instead.
< 
  Running 'RChomog.R' [5s]
  Comparing 'RChomog.Rout' to 'RChomog.Rout.save' ... OK
  Running 'biplot.R' [3s]
  Comparing 'biplot.Rout' to 'biplot.Rout.save' ... OK
  Running 'bwt.R' [4s]
  Comparing 'bwt.Rout' to 'bwt.Rout.save' ... OK
  Running 'diagonalRef.R' [4s]
  Comparing 'diagonalRef.Rout' to 'diagonalRef.Rout.save' ... OK
  Running 'doubleUnidiff.R' [3s]
  Comparing 'doubleUnidiff.Rout' to 'doubleUnidiff.Rout.save' ... OK
  Running 'gammi.R' [3s]
  Comparing 'gammi.Rout' to 'gammi.Rout.save' ...14c14
< Running main iterations.......................................................
---
> Running main iterations........................................................
  Running 'logexcess.R' [2s]
  Comparing 'logexcess.Rout' to 'logexcess.Rout.save' ... OK
  Running 'logistic.R' [4s]
  Comparing 'logistic.Rout' to 'logistic.Rout.save' ... OK
  Running 'nls.R' [2s]
  Comparing 'nls.Rout' to 'nls.Rout.save' ... OK
  Running 'stereotype.R' [2s]
  Running 'unidiff.R' [3s]
  Comparing 'unidiff.Rout' to 'unidiff.Rout.save' ...26,30d25
< Warning message:
< In setCoefs - ref %*% setCoefs :
<   Recycling array of length 1 in vector-array arithmetic is deprecated.
<   Use c() or as.vector() instead.
< 
Running the tests in 'tests/stereotype.R' failed.
Last 13 lines of output:
  > library(nnet)
  > .incidence <- class.ind(backPain$pain)
  > .counts <- as.vector(t(.incidence))
  > .rowID <- factor(t(row(.incidence)))
  > backPain <- backPain[.rowID, ]
  > backPain$pain <- C(factor(rep(levels(backPain$pain), nrow(.incidence)),
  +                           levels = levels(backPain$pain), ordered = TRUE),
  +                    treatment)
  > 
  > noRelationship <- gnm(.counts ~ pain, eliminate = .rowID,
  +                       family = "poisson", data = backPain)
  Error in model.frame.default(formula = .counts ~ pain - 1, eliminate = .rowID,  : 
    variable lengths differ (found for '.rowID')
  Calls: gnm -> eval -> eval -> model.frame -> model.frame.default
  Execution halted