CCA: no visible binding for global variable ‘sd’
CCA: no visible global function definition for ‘cor’
CCA.permute.both: no visible global function definition for ‘cor’
CCA.permute.both: no visible binding for global variable ‘sd’
CCA.permute.justone: no visible global function definition for ‘cor’
CCA.permute.justone: no visible global function definition for ‘sd’
CCA.permute.xonly: no visible global function definition for ‘cor’
CCA.permute.xonly: no visible binding for global variable ‘sd’
CCA.permute.zonly: no visible global function definition for ‘cor’
CCA.permute.zonly: no visible binding for global variable ‘sd’
CCAPhenotypeZeroSome: no visible global function definition for
  ‘quantile’
CCAPhenotypeZeroSome: no visible global function definition for ‘par’
CGH.SMD: no visible global function definition for ‘rnorm’
ChooseLambda1Lambda2: no visible global function definition for
  ‘lowess’
ChooseLambda1Lambda2: no visible global function definition for
  ‘quantile’
ChooseLambda1Lambda2old: no visible global function definition for
  ‘lowess’
ChooseLambda1Lambda2old: no visible global function definition for
  ‘quantile’
GetCors: no visible global function definition for ‘cor’
MultiCCA.permute: no visible global function definition for ‘sd’
PMDL1FL.cv: no visible global function definition for ‘runif’
PMDL1FL.cv: no visible binding for global variable ‘sd’
PMDL1L1.cv: no visible global function definition for ‘runif’
PMDL1L1.cv: no visible binding for global variable ‘sd’
SMD: no visible global function definition for ‘rnorm’
SMDOrth: no visible global function definition for ‘rnorm’
SMDOrth: no visible global function definition for ‘lsfit’
SPC.cv: no visible global function definition for ‘runif’
SPC.cv: no visible binding for global variable ‘sd’
SparseCCA: no visible global function definition for ‘rnorm’
cor.xl.ImputeData: no visible global function definition for
  ‘impute.knn’
cor.xl.Plot1: no visible global function definition for ‘png’
cor.xl.Plot1: no visible global function definition for ‘plot’
cor.xl.Plot1: no visible global function definition for ‘dev.off’
cor.xl.Plot2: no visible global function definition for ‘png’
cor.xl.Plot2: no visible global function definition for ‘title’
cor.xl.Plot2: no visible global function definition for ‘dev.off’
cor.xl.Plot2a: no visible global function definition for ‘png’
cor.xl.Plot2a: no visible global function definition for ‘title’
cor.xl.Plot2a: no visible global function definition for ‘dev.off’
cor.xl.Plot2b: no visible global function definition for ‘png’
cor.xl.Plot2b: no visible global function definition for ‘title’
cor.xl.Plot2b: no visible global function definition for ‘dev.off’
cor.xl.Plot3: no visible global function definition for ‘png’
cor.xl.Plot3: no visible global function definition for ‘title’
cor.xl.Plot3: no visible global function definition for ‘dev.off’
cor.xl.Plot3a: no visible global function definition for ‘png’
cor.xl.Plot3a: no visible global function definition for ‘title’
cor.xl.Plot3a: no visible global function definition for ‘dev.off’
cor.xl.Plot3b: no visible global function definition for ‘png’
cor.xl.Plot3b: no visible global function definition for ‘title’
cor.xl.Plot3b: no visible global function definition for ‘dev.off’
plot.CCA.permute: no visible global function definition for ‘par’
plot.CCA.permute: no visible global function definition for ‘plot’
plot.CCA.permute: no visible global function definition for ‘points’
plot.CCA.permute: no visible global function definition for ‘lines’
plot.CGH.FL.Single: no visible global function definition for ‘plot’
plot.CGH.FL.Single: no visible global function definition for
  ‘segments’
plot.CGH.FL.Single: no visible global function definition for ‘text’
plot.MultiCCA.permute: no visible global function definition for ‘par’
plot.MultiCCA.permute: no visible global function definition for ‘plot’
plot.MultiCCA.permute: no visible global function definition for
  ‘points’
plot.MultiCCA.permute: no visible global function definition for
  ‘lines’
plot.PMDL1FL.cv: no visible global function definition for ‘par’
plot.PMDL1FL.cv: no visible global function definition for ‘plot’
plot.PMDL1FL.cv: no visible global function definition for ‘points’
plot.PMDL1FL.cv: no visible global function definition for ‘lines’
plot.PMDL1L1.cv: no visible global function definition for ‘plot’
plot.PMDL1L1.cv: no visible global function definition for ‘points’
plot.PMDL1L1.cv: no visible global function definition for ‘lines’
plot.SPC.cv: no visible global function definition for ‘plot’
plot.SPC.cv: no visible global function definition for ‘points’
plot.SPC.cv: no visible global function definition for ‘lines’
safesvd: no visible global function definition for ‘rnorm’
Undefined global functions or variables:
  cor dev.off impute.knn lines lowess lsfit par plot png points
  quantile rnorm runif sd segments text title
Consider adding
  importFrom("grDevices", "dev.off", "png")
  importFrom("graphics", "lines", "par", "plot", "points", "segments",
             "text", "title")
  importFrom("stats", "cor", "lowess", "lsfit", "quantile", "rnorm",
             "runif", "sd")
to your NAMESPACE file.

Found the following assignments to the global environment:
File ‘PMA/R/CCA.xlfuns.R’:
  assign(paste("cor.", x, sep = ""), val, pos = .GlobalEnv)