Rd file 'auc.roc.plot.Rd':
  \usage lines wider than 90 characters:
     auc.roc.plot(DATA, threshold = 101, find.auc = TRUE, which.model = (1:(ncol(DATA) - 2)), na.rm = FALSE, xlab = "1-Specificity (false po ... [TRUNCATED]

Rd file 'calibration.plot.Rd':
  \usage lines wider than 90 characters:
     calibration.plot(DATA, which.model = 1, na.rm = FALSE, alpha = 0.05, N.bins = 5, xlab = "Predicted Probability of Occurrence", ylab = " ... [TRUNCATED]

Rd file 'cmx.Rd':
  \examples lines wider than 100 characters:
          SIMDATA$Predicted[SIMDATA$Observed==1]<-rnorm(n=length(SIMDATA$Observed[SIMDATA$Observed==1]),mean=.8,sd=.15)
          SIMDATA$Predicted[SIMDATA$Observed==0]<-rnorm(n=length(SIMDATA$Observed[SIMDATA$Observed==0]),mean=.2,sd=.15)
          SIMDATA$Predicted<-(SIMDATA$Predicted-min(SIMDATA$Predicted))/(max(SIMDATA$Predicted)-min(SIMDATA$Predicted))

Rd file 'error.threshold.plot.Rd':
  \usage lines wider than 90 characters:
     error.threshold.plot(DATA, threshold = 101, which.model = 1, na.rm = FALSE, xlab = "Threshold", ylab = "Accuracy Measures", main = NULL ... [TRUNCATED]
  \examples lines wider than 100 characters:
                                     opt.methods=c("Default", "Sens=Spec", "MinROCdist"),                                    vert.lines=TRUE ... [TRUNCATED]

Rd file 'optimal.thresholds.Rd':
  \usage lines wider than 90 characters:
     optimal.thresholds(DATA = NULL, threshold = 101, which.model = 1:(ncol(DATA)-2), model.names = NULL, na.rm = FALSE, opt.methods = NULL, ... [TRUNCATED]

Rd file 'presence.absence.accuracy.Rd':
  \usage lines wider than 90 characters:
     presence.absence.accuracy(DATA, threshold = 0.5, find.auc = TRUE, st.dev = TRUE, which.model = (1:(ncol(DATA) - 2)), na.rm = FALSE)

Rd file 'presence.absence.hist.Rd':
  \usage lines wider than 90 characters:
     presence.absence.hist(DATA, which.model = 1, na.rm = FALSE, xlab = "predicted probability", ylab = "number of plots", main = NULL, mode ... [TRUNCATED]

Rd file 'presence.absence.simulation.Rd':
  \usage lines wider than 90 characters:
     presence.absence.simulation(n, prevalence, N.models = 1, shape1.absent, shape2.absent, shape1.present, shape2.present)

Rd file 'presence.absence.summary.Rd':
  \usage lines wider than 90 characters:
     presence.absence.summary(DATA, threshold = 101, find.auc = TRUE, which.model = 1, na.rm = FALSE, main = NULL, model.names = NULL, alpha ... [TRUNCATED]

These lines will be truncated in the PDF manual.