Running examples in ‘ConnMatTools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: optimalSplitConnMat
> ### Title: Iteratively, optimally split a connectivity matrix
> ### Aliases: optimalSplitConnMat
> 
> ### ** Examples
> 
> library(ConnMatTools)
> data(chile.loco)
> 
> num <- prod(dim(chile.loco)) / sum(chile.loco)
> betas <- betasVectorDefault(n=num,steps=4)
> chile.loco.split <- optimalSplitConnMat(chile.loco,normalize.cols=FALSE,
+                                         betas=betas)
[1] "Starting cycle 1"
[1] "beta = 7.87433911214873"
[1] "beta = 1.35019532101316"
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[1] "beta = 7.87433911214873"
[1] "beta = 984.292389018592"
[1] "Starting cycle 2"
[1] "beta = 7.87433911214873"
[1] "beta = 1.35019532101316"
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[1] "beta = 7.87433911214873"
[1] "beta = 984.292389018592"
Error in data.frame(quality = qualities, index = 1:length(qualities)) : 
  object 'qualities' not found
Calls: optimalSplitConnMat ... structure -> eval -> eval -> tapply -> nrow -> data.frame
Execution halted