Found an obsolete/platform-specific call in the following functions:
  ‘D.H.est’ ‘dD.dt.analysis’ ‘read.plot.cerio.out’
  ‘read.plot.forsucc.out’ ‘read.plot.river.out’ ‘sens’ ‘soil.water’
  ‘vars.out’
Found the platform-specific device:
  ‘win.graph’
dev.new() is the preferred way to open a new device, in the unlikely
event one is needed.
D.H.est: no visible global function definition for ‘lm’
D.H.est: no visible global function definition for ‘layout’
D.H.est: no visible global function definition for ‘par’
D.H.est: no visible global function definition for ‘plot’
D.H.est: no visible global function definition for ‘lines’
D.H.est: no visible global function definition for ‘title’
D.H.est: no visible global function definition for ‘fitted’
D.H.est: no visible global function definition for ‘resid’
D.H.est: no visible global function definition for ‘abline’
D.H.est: no visible global function definition for ‘nls’
D.H.est: no visible global function definition for ‘coef’
D.plot: no visible global function definition for ‘matplot’
D.plot: no visible global function definition for ‘abline’
D.plot: no visible global function definition for ‘legend’
PPrates.depth: no visible global function definition for ‘layout’
PPrates.depth: no visible global function definition for ‘par’
PPrates.depth: no visible global function definition for ‘plot’
PPrates.depth: no visible global function definition for ‘abline’
PPrates.depth: no visible global function definition for ‘matplot’
PPrates.depth: no visible global function definition for ‘legend’
Q10.mruns: no visible global function definition for ‘layout’
Q10.mruns: no visible global function definition for ‘par’
Q10.mruns: no visible global function definition for ‘matplot’
Q10.mruns: no visible global function definition for ‘legend’
Q10.mruns: no visible global function definition for ‘mtext’
ReIm.plot: no visible global function definition for ‘plot’
ReIm.plot: no visible global function definition for ‘abline’
ReIm.plot: no visible global function definition for ‘lines’
ReIm.plot: no visible global function definition for ‘arrows’
ReIm.plot: no visible global function definition for ‘legend’
ReIm.plot: no visible global function definition for ‘mtext’
ReIm.plot: no visible global function definition for ‘title’
dD.dt.analysis: no visible global function definition for ‘layout’
dD.dt.analysis: no visible global function definition for ‘par’
dD.dt.analysis: no visible global function definition for ‘matplot’
dD.dt.analysis: no visible global function definition for ‘legend’
dD.dt.analysis: no visible global function definition for ‘mtext’
dD.dt.calibra: no visible global function definition for ‘layout’
dD.dt.calibra: no visible global function definition for ‘par’
dD.dt.calibra: no visible global function definition for ‘matplot’
dD.dt.calibra: no visible global function definition for ‘lines’
dD.dt.calibra: no visible global function definition for ‘legend’
dD.dt.calibra: no visible global function definition for ‘mtext’
diversity: no visible global function definition for ‘pdf’
diversity: no visible global function definition for ‘layout’
diversity: no visible global function definition for ‘par’
diversity: no visible global function definition for ‘matplot’
diversity: no visible global function definition for ‘legend’
diversity: no visible global function definition for ‘dev.off’
env.factors.analysis: no visible global function definition for
  ‘layout’
env.factors.analysis: no visible global function definition for ‘par’
env.factors.analysis: no visible global function definition for
  ‘matplot’
env.factors.analysis: no visible global function definition for
  ‘legend’
expon.rand: no visible global function definition for ‘rnorm’
ge.growth: no visible global function definition for ‘layout’
ge.growth: no visible global function definition for ‘par’
ge.growth: no visible global function definition for ‘matplot’
ge.growth: no visible global function definition for ‘legend’
markov.rain: no visible global function definition for ‘runif’
markov.rain: no visible global function definition for ‘layout’
markov.rain: no visible global function definition for ‘par’
markov.rain: no visible global function definition for ‘plot’
markov.rain: no visible global function definition for ‘hist’
markov.rain.seq: no visible global function definition for ‘runif’
model.eval: no visible global function definition for ‘pdf’
model.eval: no visible global function definition for ‘layout’
model.eval: no visible global function definition for ‘par’
model.eval: no visible global function definition for ‘plot’
model.eval: no visible global function definition for ‘lines’
model.eval: no visible global function definition for ‘legend’
model.eval: no visible global function definition for ‘abline’
model.eval: no visible global function definition for ‘dev.off’
mruns.out: no visible global function definition for ‘pdf’
mruns.out: no visible global function definition for ‘par’
mruns.out: no visible global function definition for ‘matplot’
mruns.out: no visible global function definition for ‘legend’
mruns.out: no visible global function definition for ‘dev.off’
mruns.out: no visible global function definition for ‘write.table’
msens: no visible global function definition for ‘sd’
msens: no visible global function definition for ‘aov’
msens: no visible global function definition for ‘friedman.test’
msens: no visible global function definition for ‘lm’
msens: no visible global function definition for ‘pdf’
msens: no visible global function definition for ‘layout’
msens: no visible global function definition for ‘par’
msens: no visible global function definition for ‘interaction.plot’
msens: no visible global function definition for ‘image’
msens: no visible global function definition for ‘grey’
msens: no visible global function definition for ‘contour’
msens: no visible global function definition for ‘title’
msens: no visible global function definition for ‘plot’
msens: no visible global function definition for ‘abline’
msens: no visible global function definition for ‘dev.off’
mway.samp: no visible global function definition for ‘runif’
onerun.out: no visible global function definition for ‘pdf’
onerun.out: no visible global function definition for ‘par’
onerun.out: no visible global function definition for ‘plot’
onerun.out: no visible global function definition for ‘dev.off’
onerun.out: no visible global function definition for ‘write.table’
pet: no visible global function definition for ‘layout’
pet: no visible global function definition for ‘par’
pet: no visible global function definition for ‘matplot’
pet: no visible global function definition for ‘title’
pet: no visible global function definition for ‘legend’
phase.plot: no visible global function definition for ‘plot’
phase.plot: no visible global function definition for ‘arrows’
phase.plot: no visible global function definition for ‘mtext’
rain.day: no visible global function definition for ‘runif’
rain.day: no visible global function definition for ‘rgamma’
rain.day: no visible global function definition for ‘rnorm’
ran.exp: no visible global function definition for ‘runif’
ran.norm: no visible global function definition for ‘runif’
ran.unif: no visible global function definition for ‘runif’
read.plot.cerio.out: no visible global function definition for ‘pdf’
read.plot.cerio.out: no visible global function definition for ‘layout’
read.plot.cerio.out: no visible global function definition for ‘par’
read.plot.cerio.out: no visible global function definition for
  ‘matplot’
read.plot.cerio.out: no visible global function definition for ‘legend’
read.plot.cerio.out: no visible global function definition for
  ‘dev.off’
read.plot.forsucc.out: no visible global function definition for ‘pdf’
read.plot.forsucc.out: no visible global function definition for
  ‘layout’
read.plot.forsucc.out: no visible global function definition for ‘par’
read.plot.forsucc.out: no visible global function definition for
  ‘matplot’
read.plot.forsucc.out: no visible global function definition for
  ‘legend’
read.plot.forsucc.out: no visible global function definition for
  ‘dev.off’
read.plot.river.out: no visible global function definition for ‘pdf’
read.plot.river.out: no visible global function definition for ‘layout’
read.plot.river.out: no visible global function definition for ‘par’
read.plot.river.out: no visible global function definition for
  ‘matplot’
read.plot.river.out: no visible global function definition for ‘legend’
read.plot.river.out: no visible global function definition for
  ‘dev.off’
read.plot.semi.out: no visible global function definition for ‘pdf’
read.plot.semi.out: no visible global function definition for ‘layout’
read.plot.semi.out: no visible global function definition for ‘par’
read.plot.semi.out: no visible global function definition for ‘matplot’
read.plot.semi.out: no visible global function definition for ‘legend’
read.plot.semi.out: no visible global function definition for ‘mtext’
read.plot.semi.out: no visible global function definition for ‘dev.off’
read.plot.zelig.out: no visible global function definition for ‘pdf’
read.plot.zelig.out: no visible global function definition for ‘layout’
read.plot.zelig.out: no visible global function definition for ‘par’
read.plot.zelig.out: no visible global function definition for
  ‘matplot’
read.plot.zelig.out: no visible global function definition for ‘legend’
read.plot.zelig.out: no visible global function definition for
  ‘dev.off’
rnum: no visible global function definition for ‘sd’
rnum.out: no visible global function definition for ‘pdf’
rnum.out: no visible global function definition for ‘par’
rnum.out: no visible global function definition for ‘plot’
rnum.out: no visible global function definition for ‘lines’
rnum.out: no visible global function definition for ‘legend’
rnum.out: no visible global function definition for ‘dev.off’
rnum.out: no visible global function definition for ‘write.table’
root.plot: no visible global function definition for ‘plot’
root.plot: no visible global function definition for ‘lines’
root.plot: no visible global function definition for ‘abline’
sens: no visible global function definition for ‘lm’
sens: no visible global function definition for ‘pdf’
sens: no visible global function definition for ‘layout’
sens: no visible global function definition for ‘par’
sens: no visible global function definition for ‘matplot’
sens: no visible global function definition for ‘legend’
sens: no visible global function definition for ‘plot’
sens: no visible global function definition for ‘lines’
sens: no visible global function definition for ‘points’
sens: no visible global function definition for ‘dev.off’
sim: no visible global function definition for ‘read.csv’
sim.comp: no visible global function definition for ‘read.csv’
sim.ga: no visible global function definition for ‘layout’
sim.ga: no visible global function definition for ‘par’
sim.ga: no visible global function definition for ‘matplot’
sim.ga: no visible global function definition for ‘legend’
sim.mruns: no visible global function definition for ‘read.csv’
sim.proj: no visible global function definition for ‘layout’
sim.proj: no visible global function definition for ‘par’
sim.proj: no visible global function definition for ‘pdf’
sim.proj: no visible global function definition for ‘matplot’
sim.proj: no visible global function definition for ‘legend’
sim.proj: no visible global function definition for ‘plot’
sim.proj: no visible global function definition for ‘dev.off’
sim.rnum: no visible global function definition for ‘read.csv’
simd: no visible global function definition for ‘read.csv’
simr: no visible global function definition for ‘read.csv’
simt: no visible global function definition for ‘read.csv’
soil.water: no visible global function definition for ‘layout’
soil.water: no visible global function definition for ‘par’
sta.plot: no visible global function definition for ‘matplot’
sta.plot: no visible global function definition for ‘legend’
sta.plot: no visible global function definition for ‘mtext’
sun.rad.hr: no visible global function definition for ‘rnorm’
sun.rad.hr.mult: no visible global function definition for ‘matplot’
sun.rad.hr.mult: no visible global function definition for ‘abline’
sun.rad.hr.mult: no visible global function definition for ‘mtext’
vars.out: no visible global function definition for ‘pdf’
vars.out: no visible global function definition for ‘layout’
vars.out: no visible global function definition for ‘par’
vars.out: no visible global function definition for ‘matplot’
vars.out: no visible global function definition for ‘legend’
vars.out: no visible global function definition for ‘text’
vars.out: no visible global function definition for ‘dev.off’
vars.out: no visible global function definition for ‘write.table’
Undefined global functions or variables:
  abline aov arrows coef contour dev.off fitted friedman.test grey hist
  image interaction.plot layout legend lines lm matplot mtext nls par
  pdf plot points read.csv resid rgamma rnorm runif sd text title
  write.table
Consider adding
  importFrom("grDevices", "dev.off", "grey", "pdf")
  importFrom("graphics", "abline", "arrows", "contour", "hist", "image",
             "layout", "legend", "lines", "matplot", "mtext", "par",
             "plot", "points", "text", "title")
  importFrom("stats", "aov", "coef", "fitted", "friedman.test",
             "interaction.plot", "lm", "nls", "resid", "rgamma", "rnorm",
             "runif", "sd")
  importFrom("utils", "read.csv", "write.table")
to your NAMESPACE file.