Error in re-building vignettes:
  ...
xelatex lgcp;
This is XeTeX, Version 3.14159265-2.6-0.99996 (TeX Live 2016) (preloaded format=xelatex)
 restricted \write18 enabled.
entering extended mode
(./lgcp.tex
LaTeX2e <2017/01/01> patch level 3
Babel <3.9r> and hyphenation patterns for 83 language(s) loaded.
(/usr/local/texlive/2016/texmf-dist/tex/latex/base/article.cls
Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
(/usr/local/texlive/2016/texmf-dist/tex/latex/base/size12.clo))
(/usr/local/texlive/2016/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/local/texlive/2016/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/local/texlive/2016/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/local/texlive/2016/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/local/texlive/2016/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/usr/local/texlive/2016/texmf-dist/tex/latex/graphics-def/xetex.def)))
(/usr/local/texlive/2016/texmf-dist/tex/latex/graphics/color.sty
(/usr/local/texlive/2016/texmf-dist/tex/latex/graphics-cfg/color.cfg))
(/usr/local/texlive/2016/texmf-dist/tex/latex/framed/framed.sty)
(/usr/local/texlive/2016/texmf-dist/tex/latex/base/alltt.sty)
(/usr/local/texlive/2016/texmf-dist/tex/latex/geometry/geometry.sty
(/usr/local/texlive/2016/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
(/usr/local/texlive/2016/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
(/usr/local/texlive/2016/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
(/usr/local/texlive/2016/texmf-dist/tex/latex/caption/caption.sty
(/usr/local/texlive/2016/texmf-dist/tex/latex/caption/caption3.sty))
(/usr/local/texlive/2016/texmf-dist/tex/latex/caption/subcaption.sty)
(/usr/local/texlive/2016/texmf-dist/tex/latex/upquote/upquote.sty
(/usr/local/texlive/2016/texmf-dist/tex/latex/base/textcomp.sty
(/usr/local/texlive/2016/texmf-dist/tex/latex/base/ts1enc.def)))
No file lgcp.aux.
(/usr/local/texlive/2016/texmf-dist/tex/latex/base/ts1cmr.fd)
*geometry* driver: auto-detecting
*geometry* detected driver: xetex

Overfull \hbox (100.72482pt too wide) in paragraph at lines 114--114
[][]\TU/lmtt/m/n/12 resG[] []=[] []\TU/lmtt/b/n/12 lgcp[][]\TU/lmtt/m/n/12 (for
mula,[] []data[] []= murderT,[] []grid[] []=[] []\TU/lmtt/b/n/12 squareRaster[]
[]\TU/lmtt/m/n/12 (borderC,[] []30[][]),[] []covariates[] []= covList,[][] 

Overfull \hbox (43.90474pt too wide) in paragraph at lines 115--115
[]    []\TU/lmtt/m/n/12 border[] []= borderC,[] []buffer[] []=[] []2000[][],[] 
[]priorCI[] []=[] []\TU/lmtt/b/n/12 list[][]\TU/lmtt/m/n/12 ([][]sd[] []=[] []\
TU/lmtt/b/n/12 c[][]\TU/lmtt/m/n/12 ([][]0.05[][],[] []0.5[][]),[] []range[] []
=[] []\TU/lmtt/b/n/12 c[][]\TU/lmtt/m/n/12 ([][]1[][],[][] 
[1
xdvipdfmx:fatal: File ended prematurely


Output file removed.
*** Error code 138
make: Fatal error: Command failed for target `lgcp.pdf'
Current working directory /home/ripley/R/packages/tests32/geostatsp.Rcheck/vign_test/geostatsp/vignettes
Error in buildVignettes(dir = "/home/ripley/R/packages/tests32/geostatsp.Rcheck/vign_test/geostatsp") : 
  running 'make' failed
Execution halted