areas_list_to_states_list_new: no visible global function definition
  for 'numstates_from_numareas'
areas_list_to_states_list_new: no visible global function definition
  for 'rcpp_areas_list_to_states_list'
axisPhylo2: no visible binding for global variable '.PlotPhyloEnv'
bears_2param_DIVA_fast: no visible global function definition for
  'rcpp_areas_list_to_states_list'
bears_2param_DIVA_fast: no visible global function definition for
  'read.tree'
bears_2param_DIVA_fast : function_to_optim: no visible global function
  definition for 'rcpp_states_list_to_DEmat'
bears_2param_DIVA_fast: no visible global function definition for
  'rcpp_states_list_to_DEmat'
bears_2param_standard_fast: no visible global function definition for
  'rcpp_areas_list_to_states_list'
bears_2param_standard_fast: no visible global function definition for
  'read.tree'
bears_2param_standard_fast : function_to_optim: no visible global
  function definition for 'rcpp_states_list_to_DEmat'
bears_2param_standard_fast: no visible global function definition for
  'rcpp_states_list_to_DEmat'
bears_2param_standard_fast_fixnode: no visible global function
  definition for 'rcpp_areas_list_to_states_list'
bears_2param_standard_fast_fixnode: no visible global function
  definition for 'read.tree'
bears_2param_standard_fast_fixnode : function_to_optim: no visible
  global function definition for 'rcpp_states_list_to_DEmat'
bears_2param_standard_fast_fortest: no visible global function
  definition for 'rcpp_areas_list_to_states_list'
bears_2param_standard_fast_fortest: no visible global function
  definition for 'read.tree'
bears_2param_standard_fast_fortest : function_to_optim: no visible
  global function definition for 'rcpp_states_list_to_DEmat'
bears_2param_standard_fast_fortest: no visible global function
  definition for 'rcpp_states_list_to_DEmat'
bears_2param_standard_fast_symOnly: no visible global function
  definition for 'rcpp_areas_list_to_states_list'
bears_2param_standard_fast_symOnly: no visible global function
  definition for 'read.tree'
bears_2param_standard_fast_symOnly : function_to_optim: no visible
  global function definition for 'rcpp_states_list_to_DEmat'
bears_2param_standard_fast_symOnly: no visible global function
  definition for 'rcpp_states_list_to_DEmat'
bears_2param_standard_fast_symOnly_simp: no visible global function
  definition for 'rcpp_areas_list_to_states_list'
bears_2param_standard_fast_symOnly_simp: no visible global function
  definition for 'read.tree'
bears_2param_standard_fast_symOnly_simp : function_to_optim: no visible
  global function definition for 'rcpp_states_list_to_DEmat'
bears_2param_standard_fast_symOnly_simp: no visible global function
  definition for 'rcpp_states_list_to_DEmat'
bears_2param_standard_slowQ_slowSP: no visible global function
  definition for 'rcpp_areas_list_to_states_list'
bears_2param_standard_slowQ_slowSP: no visible global function
  definition for 'read.tree'
bears_2param_standard_slowQ_slowSP : function_to_optim: no visible
  global function definition for 'rcpp_states_list_to_DEmat'
bears_2param_standard_slowQ_slowSP: no visible global function
  definition for 'rcpp_states_list_to_DEmat'
bears_3param_standard_fast: no visible global function definition for
  'rcpp_areas_list_to_states_list'
bears_3param_standard_fast: no visible global function definition for
  'read.tree'
bears_3param_standard_fast : function_to_optim: no visible global
  function definition for 'rcpp_states_list_to_DEmat'
bears_3param_standard_fast: no visible global function definition for
  'rcpp_states_list_to_DEmat'
bears_3param_standard_fast_fixnode: no visible global function
  definition for 'rcpp_areas_list_to_states_list'
bears_3param_standard_fast_fixnode: no visible global function
  definition for 'read.tree'
bears_3param_standard_fast_fixnode : function_to_optim: no visible
  global function definition for 'rcpp_states_list_to_DEmat'
bears_3param_standard_fast_noJ: no visible global function definition
  for 'rcpp_areas_list_to_states_list'
bears_3param_standard_fast_noJ: no visible global function definition
  for 'read.tree'
bears_3param_standard_fast_noJ : function_to_optim: no visible global
  function definition for 'rcpp_states_list_to_DEmat'
bears_3param_standard_fast_noJ: no visible global function definition
  for 'rcpp_states_list_to_DEmat'
bears_4param_standard_fast: no visible global function definition for
  'rcpp_areas_list_to_states_list'
bears_4param_standard_fast: no visible global function definition for
  'read.tree'
bears_4param_standard_fast : function_to_optim: no visible global
  function definition for 'rcpp_states_list_to_DEmat'
bears_4param_standard_fast: no visible global function definition for
  'rcpp_states_list_to_DEmat'
bears_5param_standard_fast: no visible global function definition for
  'rcpp_areas_list_to_states_list'
bears_5param_standard_fast: no visible global function definition for
  'read.tree'
bears_5param_standard_fast : function_to_optim: no visible global
  function definition for 'rcpp_states_list_to_DEmat'
bears_5param_standard_fast: no visible global function definition for
  'rcpp_states_list_to_DEmat'
bears_5param_standard_fast_diffstart: no visible global function
  definition for 'rcpp_areas_list_to_states_list'
bears_5param_standard_fast_diffstart: no visible global function
  definition for 'read.tree'
bears_5param_standard_fast_diffstart : function_to_optim: no visible
  global function definition for 'rcpp_states_list_to_DEmat'
bears_5param_standard_fast_diffstart: no visible global function
  definition for 'rcpp_states_list_to_DEmat'
bears_5param_standard_fast_v: no visible global function definition for
  'rcpp_areas_list_to_states_list'
bears_5param_standard_fast_v: no visible global function definition for
  'read.tree'
bears_5param_standard_fast_v : function_to_optim: no visible global
  function definition for 'rcpp_states_list_to_DEmat'
bears_5param_standard_fast_v: no visible global function definition for
  'rcpp_states_list_to_DEmat'
bears_6param_standard_fast_ys_v: no visible global function definition
  for 'rcpp_areas_list_to_states_list'
bears_6param_standard_fast_ys_v: no visible global function definition
  for 'read.tree'
bears_6param_standard_fast_ys_v : function_to_optim: no visible global
  function definition for 'rcpp_states_list_to_DEmat'
bears_6param_standard_fast_ys_v: no visible global function definition
  for 'rcpp_states_list_to_DEmat'
bears_9param_standard_fast_ys_v_cb: no visible global function
  definition for 'rcpp_areas_list_to_states_list'
bears_9param_standard_fast_ys_v_cb: no visible global function
  definition for 'read.tree'
bears_9param_standard_fast_ys_v_cb : function_to_optim: no visible
  global function definition for 'rcpp_states_list_to_DEmat'
bears_9param_standard_fast_ys_v_cb: no visible global function
  definition for 'rcpp_states_list_to_DEmat'
bears_optim_run: no visible global function definition for
  'rcpp_areas_list_to_states_list'
bears_optim_run: no visible global function definition for 'read.tree'
bears_optim_run: no visible global function definition for
  'rcpp_states_list_to_DEmat'
calc_loglike_for_optim: no visible global function definition for
  'rcpp_states_list_to_DEmat'
calc_loglike_sp: no visible global function definition for 'mat2coo'
calc_loglike_sp: no visible global function definition for
  'rcpp_calc_anclikes_sp_COOprobs'
calc_loglike_sp: no visible global function definition for
  'rcpp_calc_anclikes_sp_COOweights_faster'
calc_loglike_sp: no visible global function definition for
  'rcpp_calc_rowsums_for_COOweights_columnar'
calc_loglike_sp: no visible global function definition for
  'expokit_dmexpv_Qmat'
calc_loglike_sp: no visible global function definition for
  'rcpp_calc_anclikes_sp'
calc_loglike_sp: no visible global function definition for
  'rcpp_calc_anclikes_sp_using_COOprobs'
calc_loglike_sp: no visible global function definition for
  'rcpp_calc_splitlikes_using_COOweights_columnar'
calc_loglike_sp: no visible global function definition for
  'expokit_dgpadm_Qmat'
calc_loglike_sp_prebyte: no visible global function definition for
  'mat2coo'
calc_loglike_sp_prebyte: no visible global function definition for
  'rcpp_calc_anclikes_sp_COOprobs'
calc_loglike_sp_prebyte: no visible global function definition for
  'rcpp_calc_anclikes_sp_COOweights_faster'
calc_loglike_sp_prebyte: no visible global function definition for
  'rcpp_calc_rowsums_for_COOweights_columnar'
calc_loglike_sp_prebyte: no visible global function definition for
  'expokit_dmexpv_Qmat'
calc_loglike_sp_prebyte: no visible global function definition for
  'rcpp_calc_anclikes_sp'
calc_loglike_sp_prebyte: no visible global function definition for
  'rcpp_calc_anclikes_sp_using_COOprobs'
calc_loglike_sp_prebyte: no visible global function definition for
  'rcpp_calc_splitlikes_using_COOweights_columnar'
calc_loglike_sp_prebyte: no visible global function definition for
  'expokit_dgpadm_Qmat'
calc_loglike_sp_stratified: no visible global function definition for
  'rcpp_states_list_to_DEmat'
calc_loglike_sp_stratified: no visible global function definition for
  'read.tree'
calc_loglike_sp_stratified: no visible global function definition for
  'mat2coo'
calc_loglike_sp_stratified: no visible global function definition for
  'rcpp_calc_anclikes_sp_COOweights_faster'
calc_loglike_sp_stratified: no visible global function definition for
  'rcpp_calc_rowsums_for_COOweights_columnar'
calc_prob_forward_onebranch_sparse: no visible global function
  definition for 'expokit_dmexpv_Qmat'
chainsaw2: no visible global function definition for 'extract.clade'
chainsaw2: no visible global function definition for 'drop.tip'
check_BioGeoBEARS_run: no visible global function definition for
  'read.tree'
check_BioGeoBEARS_run: no visible global function definition for
  'is.binary.tree'
check_BioGeoBEARS_run: no visible global function definition for
  'numstates_from_numareas'
get_all_daughter_tips_of_a_node: no visible global function definition
  for 'extract.clade'
get_all_node_ages: no visible global function definition for
  'dist.nodes'
get_node_ages_of_tips: no visible global function definition for
  'dist.nodes'
get_statesColors_table: no visible global function definition for
  'rcpp_areas_list_to_states_list'
given_a_starting_state_simulate_split: no visible global function
  definition for 'rcpp_calc_rowsums_for_COOweights_columnar'
map_LG_MLsplits_to_tree: no visible global function definition for
  'nodelabels'
map_LG_MLsplits_to_tree: no visible global function definition for
  'tiplabels'
map_LG_MLsplits_to_tree: no visible global function definition for
  'axisPhylo'
map_LG_MLsplits_to_tree_corners: no visible global function definition
  for 'axisPhylo'
map_LG_MLsplits_to_tree_corners: no visible global function definition
  for 'tiplabels'
map_LG_MLstates_to_tree: no visible global function definition for
  'axisPhylo'
map_LG_MLstates_to_tree: no visible global function definition for
  'nodelabels'
map_LG_MLstates_to_tree: no visible global function definition for
  'tiplabels'
map_LGpy_MLsplits_to_tree: no visible global function definition for
  'nodelabels'
map_LGpy_MLsplits_to_tree: no visible global function definition for
  'tiplabels'
map_LGpy_MLsplits_to_tree: no visible global function definition for
  'axisPhylo'
nodenums_bottom_up: no visible global function definition for 'nNodes'
nodenums_bottom_up: no visible global function definition for 'nTips'
nodenums_bottom_up: no visible global function definition for 'nodeId'
plot_BioGeoBEARS_model: no visible global function definition for
  'rcpp_areas_list_to_states_list'
plot_BioGeoBEARS_results: no visible global function definition for
  'read.tree'
plot_BioGeoBEARS_results: no visible global function definition for
  'numstates_from_numareas'
plot_BioGeoBEARS_results: no visible global function definition for
  'rcpp_areas_list_to_states_list'
plot_BioGeoBEARS_results: no visible global function definition for
  'tiplabels'
plot_BioGeoBEARS_results: no visible global function definition for
  'axisPhylo'
plot_BioGeoBEARS_results: no visible global function definition for
  'nodelabels'
plot_cladogenesis_size_probabilities: no visible global function
  definition for 'rcpp_areas_list_to_states_list'
plot_cladogenesis_size_probabilities: no visible global function
  definition for 'rcpp_calc_anclikes_sp_COOweights_faster'
plot_cladogenesis_size_probabilities: no visible global function
  definition for 'rcpp_calc_rowsums_for_COOweights_columnar'
postorder_nodes_phylo4_return_table: no visible global function
  definition for 'nodeId'
postorder_nodes_phylo4_return_table: no visible global function
  definition for 'descendants'
prune_specimens_to_species: no visible global function definition for
  'axisPhylo'
prune_specimens_to_species: no visible global function definition for
  'drop.tip'
prune_specimens_to_species: no visible global function definition for
  'is.ultrametric'
readfiles_BioGeoBEARS_run: no visible global function definition for
  'read.tree'
section_the_tree: no visible global function definition for 'read.tree'
section_the_tree: no visible global function definition for 'axisPhylo'
simulated_indexes_to_tipranges_object: no visible global function
  definition for 'read.tree'
traverse_up: no visible global function definition for 'children'