.plot.nbp.test: no visible global function definition for ‘boxplot’
compute.tail.prob: no visible global function definition for ‘dnbinom’
disp.nbq: no visible global function definition for ‘median’
disp.nbs: no visible global function definition for ‘quantile’
disp.step: no visible global function definition for ‘quantile’
estimate.norm.factors.AH2010 : <anonymous>: no visible global function
  definition for ‘median’
example.smart.plot: no visible global function definition for ‘rnorm’
example.smart.plot: no visible global function definition for ‘par’
example.smart.plot: no visible global function definition for ‘plot’
example.smart.plot: no visible global function definition for ‘rgb’
hoa.1d: no visible global function definition for ‘pnorm’
hoa.hd: no visible global function definition for ‘pchisq’
irls.nb: no visible global function definition for ‘txtProgressBar’
irls.nb: no visible global function definition for ‘setTxtProgressBar’
ll.nb: no visible global function definition for ‘dnbinom’
ma.plot: no visible global function definition for ‘abline’
ma.plot: no visible global function definition for ‘points’
mv.line: no visible global function definition for ‘lines’
mv.plot: no visible binding for global variable ‘var’
mv.points: no visible binding for global variable ‘var’
mv.points: no visible global function definition for ‘points’
optim.disp.apl: no visible global function definition for ‘optim’
optim.disp.pl: no visible global function definition for ‘optim’
optim.pcl: no visible global function definition for ‘optim’
phi.line: no visible global function definition for ‘lines’
phi.plot: no visible binding for global variable ‘var’
plot.nb.data: no visible global function definition for ‘boxplot’
plot.nb.data: no visible global function definition for ‘hist’
plot.nb.data : panel.hist: no visible global function definition for
  ‘par’
plot.nb.data : panel.hist: no visible global function definition for
  ‘hist’
plot.nb.data : panel.hist: no visible global function definition for
  ‘rect’
plot.nb.data: no visible global function definition for ‘pairs’
plot.nb.data : <anonymous>: no visible global function definition for
  ‘abline’
plot.nb.dispersion: no visible global function definition for ‘plot’
plot.nbp: no visible global function definition for ‘boxplot’
plot.nbp: no visible global function definition for ‘par’
print.nb.data: no visible global function definition for ‘str’
print.nb.data: no visible global function definition for ‘head’
print.nb.dispersion: no visible global function definition for ‘str’
print.nb.dispersion: no visible global function definition for ‘head’
print.nb.test: no visible global function definition for ‘str’
smart.plot: no visible global function definition for ‘xy.coords’
smart.plot: no visible global function definition for ‘gray’
smart.plot: no visible global function definition for ‘rgb’
smart.points: no visible global function definition for ‘xy.coords’
smart.points: no visible global function definition for ‘gray’
smart.points: no visible global function definition for ‘rgb’
smart.points: no visible global function definition for ‘points’
test.coefficient: no visible global function definition for
  ‘txtProgressBar’
test.coefficient: no visible global function definition for
  ‘setTxtProgressBar’
test.compute.tail.prob: no visible global function definition for
  ‘rnbinom’
test.compute.tail.prob: no visible global function definition for
  ‘plot’
test.compute.tail.prob: no visible global function definition for
  ‘hist’
thin.counts: no visible global function definition for ‘rbinom’
Undefined global functions or variables:
  abline boxplot dnbinom gray head hist lines median optim pairs par
  pchisq plot pnorm points quantile rbinom rect rgb rnbinom rnorm
  setTxtProgressBar str txtProgressBar var xy.coords
Consider adding
  importFrom("grDevices", "gray", "rgb", "xy.coords")
  importFrom("graphics", "abline", "boxplot", "hist", "lines", "pairs",
             "par", "plot", "points", "rect")
  importFrom("stats", "dnbinom", "median", "optim", "pchisq", "pnorm",
             "quantile", "rbinom", "rnbinom", "rnorm", "var")
  importFrom("utils", "head", "setTxtProgressBar", "str",
             "txtProgressBar")
to your NAMESPACE file.