SNPsm2: no visible global function definition for 'gray'
SNPsm2: no visible global function definition for 'cor'
dircor2: no visible global function definition for 'as.dist'
dircor2: no visible global function definition for 'cor'
dircor2: no visible global function definition for 'dist'
dircor2: no visible global function definition for 'plot'
dircor2: no visible global function definition for 'points'
dircor2: no visible global function definition for 'lines'
dircor2: no visible global function definition for 'abline'
fspa2: no visible global function definition for 'hclust'
fspa2: no visible global function definition for 'cutree'
fspa2: no visible global function definition for 'as.dendrogram'
matrixplot: no visible global function definition for 'cor'
mtab: no visible global function definition for 'as.dist'
mtab: no visible global function definition for 'cor'
mtab: no visible global function definition for 'hclust'
mtab: no visible global function definition for 'cutree'
mtab: no visible global function definition for 'aov'
mtab: no visible global function definition for 'anova'
orank1: no visible global function definition for 'cor'
outly: no visible global function definition for 'as.dist'
outly: no visible global function definition for 'cor'
overly2: no visible global function definition for 'dist'
pcoatest: no visible global function definition for 'dist'
pcoatest: no visible global function definition for 'as.dist'
pcoatest: no visible global function definition for 'cor'
pcoatest: no visible global function definition for 'prcomp'
plot.SNPsm: no visible global function definition for 'par'
plot.SNPsm: no visible global function definition for 'gray'
plot.SNPsm: no visible global function definition for 'plot'
plot.SNPsm: no visible global function definition for 'points'
plot.SNPsm: no visible global function definition for 'rgb'
plot.SNPsm: no visible global function definition for 'text'
plot.SNPsm: no visible global function definition for 'legend'
plot.SNPsm: no visible global function definition for 'cor'
plot.SNPtm: no visible global function definition for 'par'
plot.SNPtm: no visible global function definition for 'plot'
plot.SNPtm: no visible global function definition for 'points'
plot.SNPtm: no visible global function definition for 'legend'
plot.SNPtm: no visible global function definition for 'rgb'
plot.SNPtm: no visible global function definition for 'lines'
plot.aocc: no visible global function definition for 'plot'
plot.aocc: no visible global function definition for 'abline'
plot.aocc: no visible global function definition for 'points'
plot.aocc: no visible global function definition for 'gray'
plot.aocc: no visible global function definition for 'text'
plot.aocc: no visible global function definition for 'legend'
plot.davesil: no visible global function definition for 'par'
plot.davesil: no visible global function definition for 'barplot'
plot.davesil: no visible global function definition for 'gray'
plot.davesil: no visible global function definition for 'legend'
plot.davesil: no visible global function definition for 'text'
plot.dircor: no visible global function definition for 'plot'
plot.dircor: no visible global function definition for 'points'
plot.dircor: no visible global function definition for 'lines'
plot.dircor: no visible global function definition for 'abline'
plot.fitmarkov: no visible global function definition for 'rgb'
plot.fitmarkov: no visible global function definition for 'plot'
plot.fitmarkov: no visible global function definition for 'lines'
plot.fitmarkov: no visible global function definition for 'points'
plot.fitmarkov: no visible global function definition for 'legend'
plot.fspa: no visible global function definition for 'par'
plot.fspa: no visible global function definition for 'plot'
plot.fspa: no visible global function definition for 'legend'
plot.fspa: no visible global function definition for 'points'
plot.fspa: no visible global function definition for 'lines'
plot.mxplot: no visible global function definition for 'par'
plot.mxplot: no visible global function definition for 'plot'
plot.mxplot: no visible global function definition for 'points'
plot.mxplot: no visible global function definition for 'text'
plot.orank: no visible global function definition for 'plot'
plot.orank: no visible global function definition for 'points'
plot.orank: no visible global function definition for 'text'
plot.outlier: no visible global function definition for 'par'
plot.outlier: no visible global function definition for 'hist'
plot.outlier: no visible global function definition for 'gray'
plot.outlier: no visible global function definition for 'plot'
plot.outlier: no visible global function definition for 'points'
plot.outlier: no visible global function definition for 'abline'
plot.outlier: no visible global function definition for 'legend'
plot.overly: no visible global function definition for 'plot'
plot.overly: no visible global function definition for 'abline'
plot.overly: no visible global function definition for 'lines'
plot.overly: no visible global function definition for 'text'
plot.overly: no visible global function definition for 'rgb'
plot.overly: no visible global function definition for 'par'
plot.overly: no visible global function definition for 'legend'
plot.pcaser: no visible global function definition for 'par'
plot.pcaser: no visible global function definition for 'plot'
plot.pcaser: no visible global function definition for 'abline'
plot.pcaser: no visible global function definition for 'points'
plot.pcaser: no visible global function definition for 'legend'
plot.pcobiplot: no visible global function definition for 'par'
plot.pcobiplot: no visible global function definition for 'plot'
plot.pcobiplot: no visible global function definition for 'abline'
plot.pcobiplot: no visible global function definition for 'legend'
plot.pcobiplot: no visible global function definition for 'text'
plot.pcobiplot: no visible binding for global variable 'sveg'
plot.pcobiplot: no visible global function definition for 'arrows'
plot.pcovar: no visible global function definition for 'par'
plot.pcovar: no visible global function definition for 'plot'
plot.pcovar: no visible global function definition for 'points'
plot.pcovar: no visible global function definition for 'abline'
plot.pcovar: no visible global function definition for 'title'
plot.speedprof: no visible global function definition for 'par'
plot.speedprof: no visible global function definition for 'plot'
plot.speedprof: no visible global function definition for 'rgb'
plot.speedprof: no visible global function definition for 'lines'
plot.speedprof: no visible global function definition for 'legend'
plot.vvelocity: no visible global function definition for 'dist'
plot.vvelocity: no visible global function definition for 'par'
plot.vvelocity: no visible global function definition for 'plot'
plot.vvelocity: no visible global function definition for 'points'
plot.vvelocity: no visible global function definition for 'text'
plot.vvelocity: no visible global function definition for 'abline'
plot.vvelocity: no visible global function definition for 'legend'
plot.vvelocity: no visible global function definition for 'lines'
plot.vvelocity: no visible global function definition for 'gray'
plottab: no visible global function definition for 'par'
plottab: no visible global function definition for 'plot'
plottab: no visible global function definition for 'image'
plottab: no visible global function definition for 'gray'
plottab: no visible global function definition for 'text'
plottab: no visible global function definition for 'lines'
plottabl: no visible global function definition for 'par'
plottabl: no visible global function definition for 'plot'
plottabl: no visible global function definition for 'image'
plottabl: no visible global function definition for 'gray'
plottabl: no visible global function definition for 'text'
plottabl: no visible global function definition for 'lines'
rcentroid: no visible global function definition for 'cor'
rcentroid: no visible global function definition for 'as.dist'
rfitmarkov: no visible global function definition for 'dist'
srank2: no visible global function definition for 'aov'
srank2: no visible global function definition for 'anova'
Undefined global functions or variables:
  abline anova aov arrows as.dendrogram as.dist barplot cor cutree dist
  gray hclust hist image legend lines par plot points prcomp rgb sveg
  text title
Consider adding
  importFrom("grDevices", "gray", "rgb")
  importFrom("graphics", "abline", "arrows", "barplot", "hist", "image",
             "legend", "lines", "par", "plot", "points", "text", "title")
  importFrom("stats", "anova", "aov", "as.dendrogram", "as.dist", "cor",
             "cutree", "dist", "hclust", "prcomp")
to your NAMESPACE file.