Error in re-building vignettes:
  ...
Observations with missing time information found - removing 1 rows
Discrete time points created:  4
Extracting first non-missing value for time independent predictors
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
Running ctsemCarefulFit with 16 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  4190.79777562264

 Not all eigenvalues of Hessian are greater than 0: 160837.713781068, 43192.3985657636, 21269.6128351014, 8473.85194222365, 1625.16959928534, 1449.83564123827, 343.313479141524, 312.923867994682, 249.096654945774, 159.646658515028, 107.984311005158, 100.176321375767, 62.098888236256, 20.0151660566496, 0.329853460565215, -0.000000157138924084889

Begin fit attempt 2 of at maximum 16 tries

 Not all eigenvalues of Hessian are greater than 0: 160837.713781068, 43192.3985657636, 21269.6128351014, 8473.85194222365, 1625.16959928534, 1449.83564123827, 343.313479141524, 312.923867994682, 249.096654945774, 159.646658515028, 107.984311005158, 100.176321375767, 62.098888236256, 20.0151660566496, 0.329853460565215, -0.000000157138924084889

Begin fit attempt 3 of at maximum 16 tries

 Lowest minimum so far:  4190.79777516632

 Not all eigenvalues of Hessian are greater than 0: 160837.776084242, 43192.4045764839, 21269.6131939373, 8473.84789225633, 1625.17335431964, 1449.83481440503, 343.309755042758, 312.925056546849, 249.083801582866, 159.635925858864, 107.975806382443, 100.179032533489, 62.0930616380061, 20.0109613487057, 0.328007095709273, -0.00000000694190701687126

Begin fit attempt 4 of at maximum 16 tries

 Lowest minimum so far:  4190.79777516632

Solution found

Running ctsemCarefulFit with 15 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  4196.73541494047

Solution found

NPSOL optimizer not available - switching to CSOLNP - consider installing OpenMx using command:  source('http://openmx.psyc.virginia.edu/getOpenMx.R') 
Running ctsem with 16 parameters
Running ctsemCarefulFit with 19 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  4151.1313211327

Solution found

Plotting fit
Plotting fit
Running ctsemCarefulFit with 23 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  4254.37894236723

 Not all eigenvalues of Hessian are greater than 0: 24915.8042412411, 4505.44370399376, 1516.30287829564, 1044.2283186684, 756.929380579542, 505.228083949411, 400.005030962328, 328.619933333911, 256.960271000284, 252.215277574409, 216.3045651813, 197.196583340883, 180.86710457207, 129.306278291899, 115.417554050139, 99.1962483735284, 77.9546603539119, 45.812301355236, 22.3446799083428, 5.76875267648805, 3.05043654574108, 1.06953103567419, -0.0000000340574710416943

Begin fit attempt 2 of at maximum 16 tries

 Lowest minimum so far:  4254.3789423672

Solution found

MANIFESTMEANS contained character labels - setting matrix to 0
MANIFESTVAR contained character labels - setting matrix to diagonal 0.00001
TDPREDVAR contained character labels - setting matrix to diagonal 0.00001
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
MANIFESTMEANS contained character labels - setting matrix to 0
MANIFESTVAR contained character labels - setting matrix to diagonal 0.00001
TDPREDVAR contained character labels - setting matrix to diagonal 0.00001
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
MANIFESTMEANS contained character labels - setting matrix to 0
MANIFESTVAR contained character labels - setting matrix to diagonal 0.00001
TDPREDVAR contained character labels - setting matrix to diagonal 0.00001
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
MANIFESTMEANS contained character labels - setting matrix to 0
MANIFESTVAR contained character labels - setting matrix to diagonal 0.00001
TDPREDVAR contained character labels - setting matrix to diagonal 0.00001
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
No missing time dependent predictors - TDPREDVAR and TDPREDMEANS fixed to observed moments for speed
Running ctsemCarefulFit with 21 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  -694.056381444458

 Not all eigenvalues of Hessian are greater than 0: 13684.0565692727, 10231.515152023, 4991.44747780432, 2582.1936097351, 721.418481805517, 266.059392877236, 206.80062036617, 153.32163979006, 61.599422620074, 35.8698071792897, 29.075302158287, 21.7264545395228, 17.7821307143849, 13.7444636539929, 4.9274919196447, 1.66601332511927, 0.579823239737643, 0.201896554019376, 0.0000172337053975233, -0.00000000000000137954760460189, -0.0000000000000636290191095351

Begin fit attempt 2 of at maximum 16 tries

 Lowest minimum so far:  -694.056381444499

 Not all eigenvalues of Hessian are greater than 0: 13684.0328058088, 10231.4792692681, 4991.44107766767, 2582.18206652956, 721.422845170961, 266.058179971271, 206.80366638218, 153.322786937338, 61.6093076496091, 35.8700976255403, 29.0756429352171, 21.7259417673603, 17.7829663987212, 13.7461055835566, 4.93109528553201, 1.66775011531478, 0.580394598124215, 0.201943232286844, 0.0000339470214645912, 0.0000000000000140474305969463, -0.00000000000000151126709611509

Begin fit attempt 3 of at maximum 16 tries

 Not all eigenvalues of Hessian are greater than 0: 13684.0328058088, 10231.4792692681, 4991.44107766767, 2582.18206652956, 721.422845170961, 266.058179971271, 206.80366638218, 153.322786937338, 61.6093076496091, 35.8700976255403, 29.0756429352171, 21.7259417673603, 17.7829663987212, 13.7461055835566, 4.93109528553201, 1.66775011531478, 0.580394598124215, 0.201943232286844, 0.0000339470214645912, 0.0000000000000140474305969463, -0.00000000000000151126709611509

Begin fit attempt 4 of at maximum 16 tries

 Lowest minimum so far:  -694.056381444519

 Not all eigenvalues of Hessian are greater than 0: 13684.0260276696, 10231.4714478649, 4991.42696878454, 2582.17644810161, 721.412692843284, 266.054922820959, 206.792060671094, 153.316045662022, 61.5983483784885, 35.8686738828361, 29.0715637797468, 21.7163492310379, 17.781145496322, 13.7413955035901, 4.921003241597, 1.66455902289235, 0.579401612036616, 0.201658393583668, 0.00000000000019956338857072, 0.00000000000000062329064792623, -0.0000110413711457049

Begin fit attempt 5 of at maximum 16 tries

 Lowest minimum so far:  -694.056381444519

 Not all eigenvalues of Hessian are greater than 0: 13684.0259751678, 10231.47407761, 4991.43396933435, 2582.17838134422, 721.415159082416, 266.054928975997, 206.799865932696, 153.318540958748, 61.6015923273853, 35.8695923438966, 29.0745985227614, 21.7222386927446, 17.781727718391, 13.7427050345075, 4.92454452252655, 1.66842180144114, 0.579373025522199, 0.201842415264785, 0.0000199421331286909, 0.0000000000000134292855179316, -0.000000000000000413308299909812

Begin fit attempt 6 of at maximum 16 tries

 Not all eigenvalues of Hessian are greater than 0: 13684.0259751678, 10231.47407761, 4991.43396933435, 2582.17838134422, 721.415159082416, 266.054928975997, 206.799865932696, 153.318540958748, 61.6015923273853, 35.8695923438966, 29.0745985227614, 21.7222386927446, 17.781727718391, 13.7427050345075, 4.92454452252655, 1.66842180144114, 0.579373025522199, 0.201842415264785, 0.0000199421331286909, 0.0000000000000134292855179316, -0.000000000000000413308299909812

Begin fit attempt 7 of at maximum 16 tries

Solution found

No missing time dependent predictors - TDPREDVAR and TDPREDMEANS fixed to observed moments for speed
transformedParams=TRUE and non positive DIFFUSION diagonal specified, setting to .00001.
Running ctsemCarefulFit with 21 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  -697.472806930182

Solution found

Single subject dataset or Kalman objective specified - ignoring any specified between subject 
      variance matrices (TRAITVAR, T0TRAITEFFECT,MANIFESTTRAITVAR, TIPREDEFFECT, TIPREDVAR, TDTIPREDCOV, T0TIPREDEFFECT)
Running ctsemCarefulFit with 10 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  -119.382333796701

Solution found

Begin carefulFit start value estimation for group g1
Begin carefulFit start value estimation for group g2

Begin fit attempt 1 of at maximum 6 tries

 Lowest minimum so far:  2112.24501947507

 OpenMx status code 6 not in list of acceptable status codes, 0
 OpenMx status code 6 not in list of acceptable status codes, 0

Begin fit attempt 2 of at maximum 6 tries

 OpenMx status code 6 not in list of acceptable status codes, 0
 OpenMx status code 6 not in list of acceptable status codes, 0

Begin fit attempt 3 of at maximum 6 tries

 OpenMx status code 6 not in list of acceptable status codes, 0
 OpenMx status code 6 not in list of acceptable status codes, 0

Begin fit attempt 4 of at maximum 6 tries

 OpenMx status code 6 not in list of acceptable status codes, 0
 OpenMx status code 6 not in list of acceptable status codes, 0

Begin fit attempt 5 of at maximum 6 tries

 OpenMx status code 6 not in list of acceptable status codes, 0
 OpenMx status code 6 not in list of acceptable status codes, 0

Begin fit attempt 6 of at maximum 6 tries

 Lowest minimum so far:  2112.24501947506

 OpenMx status code 6 not in list of acceptable status codes, 0
 OpenMx status code 6 not in list of acceptable status codes, 0

Retry limit reached
T0VAR contained character labels - setting matrix to diagonal 0.00001
T0MEANS contained character labels - setting matrix to 0
MANIFESTMEANS contained character labels - setting matrix to 0
Discrete time points created:  200
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
Plotting rows 1, 
Single subject dataset or Kalman objective specified - ignoring any specified between subject 
      variance matrices (TRAITVAR, T0TRAITEFFECT,MANIFESTTRAITVAR, TIPREDEFFECT, TIPREDVAR, TDTIPREDCOV, T0TIPREDEFFECT)
transformedParams=TRUE and non positive DIFFUSION diagonal specified, setting to .00001.
Running ctsemCarefulFit with 8 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  763.526261485867

 Not all eigenvalues of Hessian are greater than 0: 17368.0073931067, 1653.19086005805, 425.449898644061, 88.6170050225654, 12.4543767592772, 0.595104551001435, 0.082549392962872, -0.00144328578779448

Begin fit attempt 2 of at maximum 16 tries

 Lowest minimum so far:  763.526261485866

Solution found

transformedParams=TRUE and non positive DIFFUSION diagonal specified, setting to .00001.

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  -3462.15389493048

Solution found

Running ctsemCarefulFit with 16 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  4190.79777515666

 Not all eigenvalues of Hessian are greater than 0: 160837.759070601, 43192.4026401215, 21269.6159535787, 8473.85362653817, 1625.16511486954, 1449.83074869923, 343.312648213065, 312.920140267033, 249.08122769969, 159.633098168838, 107.985561435078, 100.174028104418, 62.0962457090766, 20.0135477896061, 0.335579370923678, -0.0000905630217646592

Begin fit attempt 2 of at maximum 16 tries

 Lowest minimum so far:  4190.79777515666

Solution found

Running ctsemCarefulFit with 19 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  4151.1313211327

Solution found

Running ctsemCarefulFit with 19 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  4206.15742545175

 Not all eigenvalues of Hessian are greater than 0: 33424.8972176988, 4273.63550181565, 2915.16147858467, 1574.32718321406, 1220.22514919681, 399.831981034925, 330.836025273554, 228.354485475815, 202.734992246958, 167.031848759478, 132.43106238843, 123.351643031962, 105.524891698778, 55.6173576823923, 17.1631164857765, 8.95354837259987, 1.12819154407136, -0.0000333981107270364, -0.000403974646643875

Begin fit attempt 2 of at maximum 16 tries

 Lowest minimum so far:  4206.15742272702

 Not all eigenvalues of Hessian are greater than 0: 33424.8897949088, 4273.63654821709, 2915.17374144742, 1574.33623772216, 1220.24411634866, 399.846006863397, 330.849199515052, 228.360761129724, 202.740837941298, 167.040319791491, 132.438655717427, 123.363494519847, 105.531876362897, 55.6235258563099, 17.1780104517508, 8.95785568472957, 1.13506457222654, 0.0000924951525797866, -0.0000107128484422477

Begin fit attempt 3 of at maximum 16 tries

 Not all eigenvalues of Hessian are greater than 0: 33424.8897949088, 4273.63654821709, 2915.17374144742, 1574.33623772216, 1220.24411634866, 399.846006863397, 330.849199515052, 228.360761129724, 202.740837941298, 167.040319791491, 132.438655717427, 123.363494519847, 105.531876362897, 55.6235258563099, 17.1780104517508, 8.95785568472957, 1.13506457222654, 0.0000924951525797866, -0.0000107128484422477

Begin fit attempt 4 of at maximum 16 tries

 Lowest minimum so far:  4206.15742271297

 Not all eigenvalues of Hessian are greater than 0: 33424.9195361488, 4273.64717957045, 2915.17886345387, 1574.33923991129, 1220.25003089628, 399.847586291271, 330.844757933342, 228.359741457658, 202.735701505244, 167.065656972925, 132.449528044194, 123.37572723009, 105.536766170221, 55.6284088329036, 17.1849876781759, 8.95464295252318, 1.16040585557391, 0.0000861919320358832, -0.0000232113938711679

Begin fit attempt 5 of at maximum 16 tries

 Lowest minimum so far:  4206.15742271296

 Not all eigenvalues of Hessian are greater than 0: 33424.8926653822, 4273.65445661997, 2915.1766810367, 1574.3407184624, 1220.24626032425, 399.848682858783, 330.843735356675, 228.35957670989, 202.736664322723, 167.057509336099, 132.454615417723, 123.372873955181, 105.53546578629, 55.6238474107907, 17.1767482816011, 8.95999770462211, 1.1427020382025, 0.0000390929317604645, -0.0000520267930951784

Begin fit attempt 6 of at maximum 16 tries

 Not all eigenvalues of Hessian are greater than 0: 33424.8926653822, 4273.65445661997, 2915.1766810367, 1574.3407184624, 1220.24626032425, 399.848682858783, 330.843735356675, 228.35957670989, 202.736664322723, 167.057509336099, 132.454615417723, 123.372873955181, 105.53546578629, 55.6238474107907, 17.1767482816011, 8.95999770462211, 1.1427020382025, 0.0000390929317604645, -0.0000520267930951784

Begin fit attempt 7 of at maximum 16 tries

 Not all eigenvalues of Hessian are greater than 0: 33424.8845251682, 4273.63418804975, 2915.17661261113, 1574.33038950219, 1220.24333615167, 399.830890176366, 330.8335402956, 228.358937367862, 202.742138608285, 167.046689668689, 132.439347321341, 123.361095085139, 105.537998563687, 55.6263573460171, 17.1816137026007, 8.95645827984539, 1.13692280081144, 0.00004209305527804, -0.0000426877691619712

Begin fit attempt 8 of at maximum 16 tries

 Not all eigenvalues of Hessian are greater than 0: 33424.8733376778, 4273.64369696007, 2915.17902968662, 1574.33372736334, 1220.22975842688, 399.847516798605, 330.836169888261, 228.35701909508, 202.740523398908, 167.051192192148, 132.447696623198, 123.355344887483, 105.539625677939, 55.6236745420968, 17.1799985331667, 8.95474247221158, 1.12586633464451, 0.00000333431704867713, -0.00000349656122727226

Begin fit attempt 9 of at maximum 16 tries

 Fit attempt worse than current best:  4206.15743780607 vs 4206.15742271296

Begin fit attempt 10 of at maximum 16 tries

 Lowest minimum so far:  4206.15742270969

 Not all eigenvalues of Hessian are greater than 0: 33424.8821541653, 4273.62719170687, 2915.18808748704, 1574.33572662999, 1220.2306286041, 399.85298503483, 330.847181917562, 228.353952679104, 202.734036764444, 167.048165527851, 132.441754498559, 123.360580672073, 105.530892340189, 55.6198770646129, 17.1706454146297, 8.95462126700962, 1.13901885803124, 0.000000117574556293814, -0.0000713827106830583

Begin fit attempt 11 of at maximum 16 tries

 Lowest minimum so far:  4206.15742270969

 Not all eigenvalues of Hessian are greater than 0: 33424.8835322022, 4273.64195169631, 2915.18257434017, 1574.35096590858, 1220.2579700753, 399.854528004498, 330.854339504439, 228.364403558064, 202.733816613495, 167.063760257664, 132.448857735691, 123.38376135104, 105.544050839917, 55.6279194098079, 17.1938858946938, 8.96114904535348, 1.151228064054, 0.0000711825251030278, -0.0000119828851566541

Begin fit attempt 12 of at maximum 16 tries

 Not all eigenvalues of Hessian are greater than 0: 33424.8835322022, 4273.64195169631, 2915.18257434017, 1574.35096590858, 1220.2579700753, 399.854528004498, 330.854339504439, 228.364403558064, 202.733816613495, 167.063760257664, 132.448857735691, 123.38376135104, 105.544050839917, 55.6279194098079, 17.1938858946938, 8.96114904535348, 1.151228064054, 0.0000711825251030278, -0.0000119828851566541

Begin fit attempt 13 of at maximum 16 tries

 Not all eigenvalues of Hessian are greater than 0: 33424.8825619181, 4273.64916781157, 2915.18082555712, 1574.33711357862, 1220.25216321255, 399.847806182237, 330.843615919275, 228.359047418646, 202.740593248378, 167.051007941409, 132.443197018414, 123.366238181816, 105.536376985354, 55.6239007083432, 17.1817069254213, 8.95452510205005, 1.14598413053877, -0.0000000539262388038285, -0.00000038723781333726

Begin fit attempt 14 of at maximum 16 tries

 Lowest minimum so far:  4206.15742270748

Solution found

NPSOL optimizer not available - switching to CSOLNP - consider installing OpenMx using command:  source('http://openmx.psyc.virginia.edu/getOpenMx.R') 
Running ctsem with 19 parameters
NPSOL optimizer not available - switching to CSOLNP - consider installing OpenMx using command:  source('http://openmx.psyc.virginia.edu/getOpenMx.R') 
Running ctsem with 19 parameters
Unique discreteDRIFT calculations per step required = 5
Unique discreteCINT calculations per step required = 5
Unique discreteDIFFUSION calculations per step required = 5
2 / 2 latent variables required for covariance calculations
Compiling model, ignore forthcoming warning re number of chains...
the number of chains is less than 1; sampling not done
Sampling...
The following numerical problems occured the indicated number of times on chain 1
                                                                            count
Exception thrown at line 361: multiply: A[1] is nan, but must not be nan!       6
Exception thrown at line 432: multiply: A[1] is -nan, but must not be nan!      2
Exception thrown at line 242: multiply: A[22] is -nan, but must not be nan!     1
When a numerical problem occurs, the Hamiltonian proposal gets rejected.
See http://mc-stan.org/misc/warnings.html#exception-hamiltonian-proposal-rejected
If the number in the 'count' column is small, do not ask about this message on stan-users.
The following numerical problems occured the indicated number of times on chain 2
                                                                                                     count
Exception thrown at line 361: multiply: A[1] is nan, but must not be nan!                                3
Exception thrown at line 361: multiply: B[1] is -nan, but must not be nan!                               2
Exception thrown at line 242: multiply: A[22] is -nan, but must not be nan!                              1
Exception thrown at line 430: cholesky_decompose: A is not symmetric. A[1,2] = -nan, but A[2,1] = -n     1
Exception thrown at line 430: cholesky_decompose: Matrix m is not positive definite                      1
Exception thrown at line 432: multiply: A[1] is -nan, but must not be nan!                               1
When a numerical problem occurs, the Hamiltonian proposal gets rejected.
See http://mc-stan.org/misc/warnings.html#exception-hamiltonian-proposal-rejected
If the number in the 'count' column is small, do not ask about this message on stan-users.
Getting discreteDRIFT, may take a moment...
removing T0VAR and T0MEANS from parameter matrices because stationary=TRUE
Unique discreteDRIFT calculations per step required = 1
Unique discreteCINT calculations per step required = 1
Unique discreteDIFFUSION calculations per step required = 1
2 / 2 latent variables required for covariance calculations
Compiling model, ignore forthcoming warning re number of chains...
the number of chains is less than 1; sampling not done
Sampling...
The following numerical problems occured the indicated number of times on chain 1
                                                                          count
Exception thrown at line 281: multiply: A[1] is nan, but must not be nan!     9
When a numerical problem occurs, the Hamiltonian proposal gets rejected.
See http://mc-stan.org/misc/warnings.html#exception-hamiltonian-proposal-rejected
If the number in the 'count' column is small, do not ask about this message on stan-users.
The following numerical problems occured the indicated number of times on chain 2
                                                                                    count
Exception thrown at line 281: multiply: A[1] is nan, but must not be nan!               9
Exception thrown at line 350: cholesky_decompose: Matrix m is not positive definite     2
When a numerical problem occurs, the Hamiltonian proposal gets rejected.
See http://mc-stan.org/misc/warnings.html#exception-hamiltonian-proposal-rejected
If the number in the 'count' column is small, do not ask about this message on stan-users.
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  : 
  Running 'texi2dvi' on 'hierarchical.tex' failed.
LaTeX errors:
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.2208 \end{kframe}
                   
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.2208 \end{kframe}
                   
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.2208 \end{kframe}
                   
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.2208 \end{kframe}
                   
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra.
Calls: buildVignettes -> texi2pdf -> texi2dvi
Execution halted