MAP.Matches: no visible global function definition for ‘quantile’
MAP.genes: no visible global function definition for ‘write.table’
RandomScore: no visible binding for global variable ‘quantile’
RankProduct: no visible global function definition for ‘RPadvance’
RankProduct: no visible global function definition for ‘topGene’
T.select: no visible global function definition for ‘quantile’
T.select: no visible global function definition for ‘lm’
T.select: no visible global function definition for ‘abline’
T.select: no visible global function definition for ‘points’
cv.filter : <anonymous>: no visible global function definition for ‘sd’
cv.filter: no visible global function definition for ‘abline’
entitybuild2: no visible global function definition for ‘mt.teststat’
mergeExprs2: no visible global function definition for ‘featureNames’
mergeExprs2: no visible global function definition for ‘assayData’
mergeExprs2: no visible global function definition for ‘assayData<-’
mergeExprs2: no visible global function definition for ‘featureNames<-’
meta.test: no visible global function definition for ‘mt.teststat’
meta.test: no visible global function definition for ‘pt’
metaMA: no visible global function definition for ‘pvalcombination’
metaMA: no visible global function definition for ‘EScombination’
metaheat: no visible binding for global variable ‘dist’
metaheat: no visible binding for global variable ‘hclust’
metaheat: no visible global function definition for ‘heat.colors’
metaheat: no visible global function definition for ‘as.dendrogram’
metaheat: no visible global function definition for ‘reorder’
metaheat: no visible global function definition for ‘order.dendrogram’
metaheat: no visible global function definition for ‘par’
metaheat: no visible global function definition for ‘layout’
metaheat: no visible global function definition for ‘image’
metaheat: no visible global function definition for ‘axis’
metaheat: no visible global function definition for ‘barplot’
metaheat2: no visible binding for global variable ‘dist’
metaheat2: no visible binding for global variable ‘hclust’
metaheat2: no visible global function definition for ‘par’
metaheat2: no visible global function definition for ‘median’
metaheat2: no visible global function definition for ‘order.dendrogram’
metaheat2: no visible global function definition for ‘as.dendrogram’
metaheat2: no visible global function definition for ‘reorder’
metaheat2: no visible binding for global variable ‘sd’
metaheat2: no visible global function definition for ‘layout’
metaheat2: no visible global function definition for ‘image’
metaheat2: no visible global function definition for ‘axis’
metaheat2: no visible global function definition for ‘mtext’
metaheat2: no visible global function definition for ‘rect’
metaheat2: no visible global function definition for ‘abline’
metaheat2: no visible global function definition for ‘lines’
metaheat2: no visible global function definition for ‘text’
metaheat2: no visible global function definition for ‘plot.new’
metaheat2: no visible global function definition for ‘title’
metaheat2: no visible global function definition for ‘density’
metaheat2: no visible global function definition for ‘hist’
metaheat2: no visible global function definition for ‘legend’
plot.SOGLresult: no visible global function definition for ‘abline’
plot.SOGLresult: no visible global function definition for ‘mtext’
plot.SOGLresult: no visible global function definition for ‘density’
plot.SOGLresult: no visible global function definition for ‘lines’
plot.SOGLresult: no visible global function definition for ‘text’
plot.SOGLresult: no visible global function definition for ‘rug’
plot.SOGLresult: no visible global function definition for ‘legend’
plot.SOGLresult: no visible global function definition for ‘matplot’
plot.SOGLresult: no visible global function definition for ‘axis’
plotES: no visible global function definition for ‘par’
plotES: no visible global function definition for ‘points’
plotES: no visible global function definition for ‘legend’
plotQvsChi: no visible global function definition for ‘qchisq’
plotQvsChi: no visible global function definition for ‘quantile’
plotQvsChi: no visible global function definition for ‘qqplot’
plotQvsChi: no visible global function definition for ‘lines’
plotclinical: no visible global function definition for ‘layout’
plotclinical: no visible global function definition for ‘par’
plotclinical: no visible global function definition for ‘text’
plotclinical: no visible global function definition for ‘barplot’
plotclinical: no visible global function definition for ‘boxplot’
plotclinical: no visible global function definition for ‘legend’
plotgene: no visible global function definition for ‘grid.newpage’
plotgene: no visible global function definition for ‘grid.layout’
plotgene: no visible global function definition for ‘unit’
plotgene: no visible global function definition for ‘viewport’
plotgene: no visible global function definition for ‘pushViewport’
plotgene: no visible global function definition for ‘convertHeight’
plotgene: no visible global function definition for ‘grobHeight’
plotgene: no visible global function definition for ‘textGrob’
plotgene: no visible global function definition for ‘grid.rect’
plotgene: no visible global function definition for ‘gpar’
plotgene: no visible global function definition for ‘grid.text’
plotgene: no visible global function definition for ‘popViewport’
plotgene: no visible global function definition for ‘grid.points’
plotgene: no visible global function definition for ‘grid.lines’
plotgene: no visible global function definition for ‘dataViewport’
plotgene: no visible global function definition for ‘grid.xaxis’
plotgene: no visible global function definition for ‘unit.c’
plotgene: no visible global function definition for ‘convertX’
plotgene2: no visible global function definition for ‘layout’
plotgene2: no visible global function definition for ‘par’
plotgene2: no visible global function definition for ‘image’
plotgene2: no visible global function definition for ‘axis’
plotgene2: no visible global function definition for ‘abline’
plotgene2: no visible global function definition for ‘lines’
plotpattern: no visible global function definition for ‘matplot’
plotpattern: no visible global function definition for ‘legend’
plotpattern: no visible global function definition for ‘abline’
plotpattern: no visible global function definition for ‘lines’
plotpattern: no visible global function definition for ‘points’
plotpattern: no visible global function definition for ‘axis’
sd.filter: no visible global function definition for ‘abline’
selectAlpha: no visible global function definition for ‘integrate’
zScores: no visible global function definition for ‘pchisq’
plot,MetaArray-ANY: no visible global function definition for
  ‘grid.newpage’
plot,MetaArray-ANY: no visible global function definition for
  ‘grid.layout’
plot,MetaArray-ANY: no visible global function definition for ‘unit’
plot,MetaArray-ANY: no visible global function definition for
  ‘viewport’
plot,MetaArray-ANY: no visible global function definition for
  ‘pushViewport’
plot,MetaArray-ANY: no visible global function definition for
  ‘plotViewport’
plot,MetaArray-ANY: no visible global function definition for
  ‘grid.text’
plot,MetaArray-ANY: no visible global function definition for
  ‘popViewport’
plot,MetaArray-ANY: no visible global function definition for
  ‘grid.rect’
plot,MetaArray-ANY: no visible global function definition for ‘gpar’
plot,MetaArray-ANY: no visible global function definition for
  ‘grid.lines’
plot,MetaArray-ANY: no visible global function definition for
  ‘grid.xaxis’
Undefined global functions or variables:
  EScombination RPadvance abline as.dendrogram assayData assayData<-
  axis barplot boxplot convertHeight convertX dataViewport density dist
  featureNames featureNames<- gpar grid.layout grid.lines grid.newpage
  grid.points grid.rect grid.text grid.xaxis grobHeight hclust
  heat.colors hist image integrate layout legend lines lm matplot
  median mt.teststat mtext order.dendrogram par pchisq plot.new
  plotViewport points popViewport pt pushViewport pvalcombination
  qchisq qqplot quantile rect reorder rug sd text textGrob title
  topGene unit unit.c viewport write.table
Consider adding
  importFrom("grDevices", "heat.colors")
  importFrom("graphics", "abline", "axis", "barplot", "boxplot", "hist",
             "image", "layout", "legend", "lines", "matplot", "mtext",
             "par", "plot.new", "points", "rect", "rug", "text", "title")
  importFrom("stats", "as.dendrogram", "density", "dist", "hclust",
             "integrate", "lm", "median", "order.dendrogram", "pchisq",
             "pt", "qchisq", "qqplot", "quantile", "reorder", "sd")
  importFrom("utils", "write.table")
to your NAMESPACE file.