Error in re-building vignettes:
  ...
Observations with missing time information found - removing 1 rows
Discrete time points created:  4
Extracting first non-missing value for time independent predictors
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
Running ctsemCarefulFit with 16 parameters
Error in runHelper(model, frontendStart, intervals, silent, suppressWarnings,  : 
  Requested improper value (1, 1) from (2, 0) matrix
Error in lapply(model@matrices, getParametersHelper, model@name, free,  : 
  trying to get slot "matrices" from an object (class "try-error") that is not an S4 object 

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  4176.87456133366

Solution found

Running ctsemCarefulFit with 15 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  4196.73541494047

Solution found

NPSOL optimizer not available - switching to CSOLNP - consider installing OpenMx using command:  source('http://openmx.psyc.virginia.edu/getOpenMx.R') 
Running ctsem with 16 parameters
Running ctsemCarefulFit with 19 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  4151.1313211327

Solution found

Plotting fit
Plotting fit
Running ctsemCarefulFit with 23 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  4254.37894236695

 Not all eigenvalues of Hessian are greater than 0: 24915.8031150964, 4505.43903983887, 1516.29766647894, 1044.23401477268, 756.92741500892, 505.227455515436, 400.012061602504, 328.626601085409, 256.959823128677, 252.225755618142, 216.306983907541, 197.195893490098, 180.878908190128, 129.310802640503, 115.416603416226, 99.1946729593676, 77.9613395403188, 45.820472628376, 22.3510316742145, 5.77208826962675, 3.05784591456456, 1.06900272922079, -0.00000961289523233666

Begin fit attempt 2 of at maximum 16 tries

 Not all eigenvalues of Hessian are greater than 0: 24915.8031150964, 4505.43903983887, 1516.29766647894, 1044.23401477268, 756.92741500892, 505.227455515436, 400.012061602504, 328.626601085409, 256.959823128677, 252.225755618142, 216.306983907541, 197.195893490098, 180.878908190128, 129.310802640503, 115.416603416226, 99.1946729593676, 77.9613395403188, 45.820472628376, 22.3510316742145, 5.77208826962675, 3.05784591456456, 1.06900272922079, -0.00000961289523233666

Begin fit attempt 3 of at maximum 16 tries

 Not all eigenvalues of Hessian are greater than 0: 24915.7625883408, 4505.45514290038, 1516.27383290813, 1044.21943406333, 756.915167094978, 505.226213427766, 399.988881039478, 328.606245002201, 256.945592991638, 252.210744792843, 216.303519686534, 197.180430830505, 180.849304965731, 129.29498229473, 115.405143388886, 99.1689519343653, 77.9480908274204, 45.8027455378597, 22.3293189528046, 5.75924331430867, 3.04581050010215, 1.06398827260543, -0.00025040921046933

Begin fit attempt 4 of at maximum 16 tries

 Not all eigenvalues of Hessian are greater than 0: 24915.7976076129, 4505.44662849984, 1516.29399078548, 1044.22160395453, 756.930232733143, 505.22601933122, 400.00433039606, 328.614832217179, 256.965117947766, 252.211948429548, 216.30356321218, 197.188161362346, 180.86981702175, 129.294875713679, 115.413199498461, 99.1907297879058, 77.9636482096782, 45.8106512363356, 22.342780793834, 5.76747984394459, 3.0424296855751, 1.06862011399114, -0.000150466507468357

Begin fit attempt 5 of at maximum 16 tries

Solution found

MANIFESTMEANS contained character labels - setting matrix to 0
MANIFESTVAR contained character labels - setting matrix to diagonal 0.00001
TDPREDVAR contained character labels - setting matrix to diagonal 0.00001
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
MANIFESTMEANS contained character labels - setting matrix to 0
MANIFESTVAR contained character labels - setting matrix to diagonal 0.00001
TDPREDVAR contained character labels - setting matrix to diagonal 0.00001
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
MANIFESTMEANS contained character labels - setting matrix to 0
MANIFESTVAR contained character labels - setting matrix to diagonal 0.00001
TDPREDVAR contained character labels - setting matrix to diagonal 0.00001
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
MANIFESTMEANS contained character labels - setting matrix to 0
MANIFESTVAR contained character labels - setting matrix to diagonal 0.00001
TDPREDVAR contained character labels - setting matrix to diagonal 0.00001
Discrete time points created:  19
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
No missing time dependent predictors - TDPREDVAR and TDPREDMEANS fixed to observed moments for speed
Running ctsemCarefulFit with 21 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  -694.056381444513

Solution found

No missing time dependent predictors - TDPREDVAR and TDPREDMEANS fixed to observed moments for speed
transformedParams=TRUE and non positive DIFFUSION diagonal specified, setting to .00001.
Running ctsemCarefulFit with 21 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  -697.472806930196

Solution found

Single subject dataset or Kalman objective specified - ignoring any specified between subject 
      variance matrices (TRAITVAR, T0TRAITEFFECT,MANIFESTTRAITVAR, TIPREDEFFECT, TIPREDVAR, TDTIPREDCOV, T0TIPREDEFFECT)
Running ctsemCarefulFit with 10 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  -119.382333796701

Solution found

Begin carefulFit start value estimation for group g1
Begin carefulFit start value estimation for group g2

Begin fit attempt 1 of at maximum 6 tries

 Lowest minimum so far:  2112.24501947524

 OpenMx status code 6 not in list of acceptable status codes, 0
 OpenMx status code 6 not in list of acceptable status codes, 0

Begin fit attempt 2 of at maximum 6 tries

 Lowest minimum so far:  2112.24501947482

 OpenMx status code 6 not in list of acceptable status codes, 0
 OpenMx status code 6 not in list of acceptable status codes, 0

Begin fit attempt 3 of at maximum 6 tries

 Lowest minimum so far:  2112.24501947446

 OpenMx status code 6 not in list of acceptable status codes, 0
 OpenMx status code 6 not in list of acceptable status codes, 0

Begin fit attempt 4 of at maximum 6 tries

 OpenMx status code 6 not in list of acceptable status codes, 0
 OpenMx status code 6 not in list of acceptable status codes, 0

Begin fit attempt 5 of at maximum 6 tries

 OpenMx status code 6 not in list of acceptable status codes, 0
 OpenMx status code 6 not in list of acceptable status codes, 0

Begin fit attempt 6 of at maximum 6 tries

 OpenMx status code 6 not in list of acceptable status codes, 0
 OpenMx status code 6 not in list of acceptable status codes, 0

Retry limit reached
T0VAR contained character labels - setting matrix to diagonal 0.00001
T0MEANS contained character labels - setting matrix to 0
MANIFESTMEANS contained character labels - setting matrix to 0
Discrete time points created:  200
imputedefs==FALSE (default, recommended) so setting observations with no time value to NA
Plotting rows 1, 
Single subject dataset or Kalman objective specified - ignoring any specified between subject 
      variance matrices (TRAITVAR, T0TRAITEFFECT,MANIFESTTRAITVAR, TIPREDEFFECT, TIPREDVAR, TDTIPREDCOV, T0TIPREDEFFECT)
transformedParams=TRUE and non positive DIFFUSION diagonal specified, setting to .00001.
Running ctsemCarefulFit with 8 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  763.009957577322

Solution found

transformedParams=TRUE and non positive DIFFUSION diagonal specified, setting to .00001.

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  -3462.15389493048

Solution found

Running ctsemCarefulFit with 16 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  4176.87456133366

Solution found

Running ctsemCarefulFit with 19 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  4151.1313211327

Solution found

Running ctsemCarefulFit with 19 parameters

Begin fit attempt 1 of at maximum 16 tries

 Lowest minimum so far:  4203.31303209733

Solution found

NPSOL optimizer not available - switching to CSOLNP - consider installing OpenMx using command:  source('http://openmx.psyc.virginia.edu/getOpenMx.R') 
Running ctsem with 19 parameters
NPSOL optimizer not available - switching to CSOLNP - consider installing OpenMx using command:  source('http://openmx.psyc.virginia.edu/getOpenMx.R') 
Running ctsem with 19 parameters
Unique discreteDRIFT calculations per step required = 5
Unique discreteCINT calculations per step required = 5
Unique discreteDIFFUSION calculations per step required = 5
2 / 2 latent variables required for covariance calculations
Compiling model, ignore forthcoming warning re number of chains...
Warning: running command '/home/ripley/R/cc/bin/R CMD SHLIB file3210b3e5694.cpp 2> file3210b3e5694.cpp.err.txt' had status 1 and error message 'Illegal seek'
Quitting from lines 296-298 (hierarchical.rnw) 
Error: processing vignette 'hierarchical.rnw' failed with diagnostics:
Compilation ERROR, function(s)/method(s) not created! "/home/ripley/R/Lib32/StanHeaders/include/stan/math/memory/stack_alloc.hpp", line 39: Error: The function "malloc" must have a prototype.
"/home/ripley/R/Lib32/StanHeaders/include/stan/math/memory/stack_alloc.hpp", line 39: Error: Using static_cast to convert from int to char* not allowed.
"/home/ripley/R/Lib32/StanHeaders/include/stan/math/memory/stack_alloc.hpp", line 147: Error: The function "free" must have a prototype.
"/home/ripley/R/Lib32/StanHeaders/include/stan/math/memory/stack_alloc.hpp", line 234: Error: The function "free" must have a prototype.
"/home/ripley/R/Lib32/BH/include/boost/config/compiler/sunpro_cc.hpp", line 117: Warning (Anachronism): Attempt to redefine BOOST_NO_CXX11_RVALUE_REFERENCES without using #undef.
"/home/ripley/R/Lib32/RcppEigen/include/Eigen/src/Core/Diagonal.h", line 222: Error: Could not find a match for Eigen::MatrixBase<
Execution halted