GASurv: no visible global function definition for ‘is’
HWE.show: no visible global function definition for ‘is’
HWE.show: no visible global function definition for ‘pchisq’
LiLog: no visible global function definition for ‘binomial’
PGC: no visible global function definition for ‘median’
PGC: no visible global function definition for ‘qchisq’
PGC: no visible global function definition for ‘ppoints’
PGC: no visible global function definition for ‘quantile’
PGC : f2: no visible global function definition for ‘ks.test’
PGC : f2: no visible global function definition for ‘median’
PGC : f2: no visible global function definition for ‘qchisq’
PGC: no visible global function definition for ‘abline’
PGC: no visible global function definition for ‘lines’
VIFGC : Clust: no visible global function definition for ‘as.dist’
VIFGC : Clust: no visible global function definition for ‘cmdscale’
VIFGC : ClustN: no visible global function definition for ‘kmeans’
VIFGC : GC_VIF_nlm: no visible global function definition for ‘ks.test’
VIFGC : GC_VIF_nlm: no visible global function definition for ‘qchisq’
VIFGC : GC_VIF_nlm: no visible global function definition for ‘median’
VIFGC : GC_VIF: no visible global function definition for ‘ks.test’
VIFGC : GC_VIF: no visible global function definition for ‘qchisq’
VIFGC : GC_VIF: no visible global function definition for ‘median’
VIFGC: no visible global function definition for ‘qchisq’
VIFGC: no visible global function definition for ‘median’
VIFGC: no visible global function definition for ‘ppoints’
VIFGC: no visible global function definition for ‘optimize’
VIFGC: no visible global function definition for ‘nlm’
VIFGC: no visible global function definition for ‘abline’
VIFGC: no visible global function definition for ‘lines’
VIFGC_ovdom : Clust: no visible global function definition for
  ‘as.dist’
VIFGC_ovdom : Clust: no visible global function definition for
  ‘cmdscale’
VIFGC_ovdom : ClustN: no visible global function definition for
  ‘kmeans’
VIFGC_ovdom : GC_VIF_nlm: no visible global function definition for
  ‘ks.test’
VIFGC_ovdom : GC_VIF_nlm: no visible global function definition for
  ‘qchisq’
VIFGC_ovdom : GC_VIF_nlm: no visible global function definition for
  ‘median’
VIFGC_ovdom : GC_VIF: no visible global function definition for
  ‘ks.test’
VIFGC_ovdom : GC_VIF: no visible global function definition for
  ‘qchisq’
VIFGC_ovdom : GC_VIF: no visible global function definition for
  ‘median’
VIFGC_ovdom: no visible global function definition for ‘qchisq’
VIFGC_ovdom: no visible global function definition for ‘ppoints’
VIFGC_ovdom: no visible global function definition for ‘optimize’
VIFGC_ovdom: no visible global function definition for ‘median’
VIFGC_ovdom: no visible global function definition for ‘nlm’
VIFGC_ovdom: no visible global function definition for ‘abline’
Xcheck: no visible global function definition for ‘is’
Xfix: no visible global function definition for ‘is’
Xfix.internal: no visible global function definition for ‘is’
add.phdata: no visible global function definition for ‘is’
add.plot: no visible global function definition for ‘is’
add.plot: no visible global function definition for ‘points’
add.plot: no visible global function definition for ‘image’
arrange_probabel_phe: no visible global function definition for
  ‘read.table’
arrange_probabel_phe: no visible global function definition for
  ‘databel’
arrange_probabel_phe: no visible global function definition for
  ‘write.table’
as.character.gwaa.data: no visible global function definition for ‘is’
as.character.snp.data: no visible global function definition for ‘is’
as.double.gwaa.data: no visible global function definition for ‘is’
as.double.snp.data: no visible global function definition for ‘is’
as.genotype.gwaa.data: no visible global function definition for ‘is’
as.genotype.snp.data: no visible global function definition for ‘is’
as.genotype.snp.data: no visible global function definition for
  ‘genotype’
as.hsgeno.gwaa.data: no visible global function definition for ‘is’
as.hsgeno.snp.data: no visible global function definition for ‘is’
as.raw.snp.data: no visible global function definition for ‘is’
as.raw.snp.mx: no visible global function definition for ‘is’
autosomal: no visible global function definition for ‘is’
blurGenotype: no visible global function definition for ‘is’
catable: no visible global function definition for ‘quantile’
catable: no visible global function definition for ‘is’
ccfast: no visible global function definition for ‘is’
ccfast: no visible global function definition for ‘flush.console’
ccfast: no visible global function definition for ‘pchisq’
ccfast: no visible global function definition for ‘new’
ccfast.new: no visible global function definition for ‘is’
check.marker: no visible global function definition for ‘is’
check.marker.internal: no visible global function definition for ‘is’
check.marker.internal: no visible global function definition for
  ‘flush.console’
check.marker.internal: no visible global function definition for
  ‘qvalue’
check.marker.internal: no visible global function definition for ‘sd’
check.marker.internal: no visible global function definition for
  ‘pchisq’
check.trait: no visible global function definition for ‘is’
checkphengen: no visible global function definition for ‘is’
cocohet: no visible global function definition for ‘is’
cocohet: no visible global function definition for ‘pchisq’
convert.snp.affymetrix: no visible global function definition for ‘is’
convert.snp.mach: no visible global function definition for
  ‘read.table’
convert.snp.mach: no visible global function definition for ‘new’
descriptives.marker: no visible global function definition for ‘is’
descriptives.marker: no visible global function definition for ‘sd’
descriptives.marker: no visible global function definition for
  ‘write.table’
descriptives.scan: no visible global function definition for ‘is’
descriptives.scan: no visible global function definition for
  ‘write.table’
descriptives.trait: no visible global function definition for ‘is’
descriptives.trait: no visible global function definition for ‘sd’
descriptives.trait: no visible global function definition for ‘t.test’
descriptives.trait: no visible global function definition for
  ‘kruskal.test’
descriptives.trait: no visible global function definition for
  ‘fisher.test’
descriptives.trait: no visible global function definition for
  ‘write.table’
dprfast: no visible global function definition for ‘is’
drop.out.points: no visible global function definition for ‘var’
dump.piece: no visible global function definition for ‘write.table’
egscore: no visible global function definition for ‘is’
egscore: no visible global function definition for ‘as’
egscore: no visible global function definition for ‘model.frame’
egscore: no visible binding for global variable ‘na.omit’
egscore: no visible global function definition for ‘model.response’
egscore: no visible global function definition for ‘model.matrix’
egscore: no visible global function definition for ‘glm.fit’
egscore: no visible global function definition for ‘lm’
egscore: no visible global function definition for ‘flush.console’
egscore: no visible global function definition for ‘pchisq’
egscore: no visible global function definition for ‘new’
egscore.old: no visible global function definition for ‘is’
egscore.old: no visible global function definition for ‘as’
egscore.old: no visible global function definition for ‘model.frame’
egscore.old: no visible binding for global variable ‘na.omit’
egscore.old: no visible global function definition for ‘model.response’
egscore.old: no visible global function definition for ‘model.matrix’
egscore.old: no visible global function definition for ‘glm.fit’
egscore.old: no visible global function definition for ‘lm’
egscore.old: no visible global function definition for ‘flush.console’
egscore.old: no visible global function definition for ‘pchisq’
estLambdaKS: no visible global function definition for ‘optimize’
estlambda: no visible global function definition for ‘qchisq’
estlambda: no visible global function definition for ‘ppoints’
estlambda: no visible global function definition for ‘lm’
estlambda: no visible global function definition for ‘median’
estlambda: no visible global function definition for ‘par’
estlambda: no visible global function definition for ‘abline’
export.impute: no visible global function definition for ‘is’
export.impute: no visible global function definition for ‘write.table’
export.merlin: no visible global function definition for ‘is’
export.merlin: no visible global function definition for ‘new’
export.merlin: no visible global function definition for ‘write.table’
export.plink: no visible global function definition for ‘write.table’
extract.annotation.impute: no visible global function definition for
  ‘extract_text_file_columns’
extract.annotation.mach: no visible global function definition for
  ‘extract_text_file_columns’
fcc: no visible global function definition for ‘is’
fcc.new: no visible global function definition for ‘is’
findRelatives: no visible global function definition for ‘is’
findRelatives: no visible global function definition for
  ‘txtProgressBar’
findRelatives: no visible global function definition for
  ‘setTxtProgressBar’
formetascore: no visible global function definition for ‘is’
formetascore: no visible global function definition for ‘as’
formetascore: no visible global function definition for ‘model.frame’
formetascore: no visible binding for global variable ‘na.omit’
generateOffspring : genSOG: no visible global function definition for
  ‘runif’
generateOffspring : infer: no visible global function definition for
  ‘rbinom’
generateOffspring: no visible global function definition for ‘rbinom’
get.snp.distr.plot: no visible global function definition for ‘na.omit’
get.snp.distr.plot: no visible global function definition for ‘bitmap’
get.snp.distr.plot: no visible global function definition for ‘par’
get.snp.distr.plot: no visible global function definition for
  ‘bartlett.test’
get.snp.distr.plot: no visible global function definition for ‘boxplot’
get.snp.distr.plot: no visible global function definition for ‘plot’
get.snp.distr.plot: no visible global function definition for ‘density’
get.snp.distr.plot: no visible global function definition for ‘dev.off’
grammar: no visible global function definition for ‘pchisq’
grammar.old: no visible global function definition for ‘is’
grammar.old: no visible global function definition for ‘flush.console’
grammar.old: no visible global function definition for ‘pchisq’
hom: no visible global function definition for ‘is’
hom.old: no visible global function definition for ‘is’
ibs: no visible global function definition for ‘is’
ibs.old: no visible global function definition for ‘is’
imphetcheck: no visible global function definition for ‘is’
impute2databel: no visible global function definition for
  ‘get_temporary_file_name’
impute2databel: no visible global function definition for
  ‘text2databel’
impute2databel: no visible global function definition for
  ‘get_dimnames’
impute2databel: no visible global function definition for ‘apply2dfo’
impute2databel: no visible global function definition for ‘databel’
impute2databel: no visible global function definition for
  ‘set_dimnames<-’
impute2databel: no visible global function definition for ‘disconnect’
impute2mach: no visible global function definition for ‘write.table’
impute2mach: no visible global function definition for ‘get_dimnames’
impute2mach: no visible global function definition for ‘as’
impute2mach: no visible global function definition for ‘disconnect’
load.gwaa.data: no visible global function definition for ‘read.table’
load.gwaa.data: no visible global function definition for ‘new’
lossFunctionLambdaKS: no visible global function definition for
  ‘ks.test’
mach2databel: no visible global function definition for
  ‘get_temporary_file_name’
mach2databel: no visible global function definition for ‘text2databel’
mach2databel: no visible global function definition for ‘get_dimnames’
makeTransitionMatrix: no visible global function definition for ‘is’
merge.gwaa.data: no visible global function definition for ‘is’
merge.gwaa.data: no visible global function definition for ‘new’
merge.snp.data: no visible global function definition for ‘is’
merge.snp.data: no visible global function definition for ‘write.table’
merge.snp.data: no visible global function definition for ‘new’
minimac2databel: no visible global function definition for
  ‘get_temporary_file_name’
minimac2databel: no visible global function definition for
  ‘text2databel’
minimac2databel: no visible global function definition for
  ‘get_dimnames’
mlreg: no visible global function definition for ‘is’
mlreg: no visible global function definition for ‘model.matrix’
mlreg: no visible global function definition for ‘model.extract’
mlreg: no visible global function definition for ‘pchisq’
mlreg: no visible global function definition for ‘new’
mlreg.p: no visible global function definition for ‘is’
mlreg.p: no visible global function definition for ‘model.matrix’
mlreg.p: no visible global function definition for ‘model.extract’
mlreg.p: no visible global function definition for ‘pchisq’
mmscore: no visible global function definition for ‘is’
mmscore: no visible global function definition for ‘flush.console’
mmscore: no visible global function definition for ‘pchisq’
mmscore: no visible global function definition for ‘new’
palinear2LiLog: no visible global function definition for ‘read.table’
palinear2LiLog: no visible global function definition for ‘write.table’
patch_strand: no visible global function definition for ‘new’
perid.summary: no visible global function definition for ‘is’
plot.check.marker: no visible global function definition for ‘is’
plot.check.marker: no visible global function definition for ‘plot’
plot.check.marker: no visible global function definition for ‘text’
plot.check.marker: no visible global function definition for ‘lines’
plot.check.marker: no visible global function definition for ‘points’
plot.check.marker: no visible global function definition for ‘abline’
plot.check.marker: no visible global function definition for ‘rug’
plot.scan.gwaa: no visible global function definition for ‘is’
plot.scan.gwaa: no visible global function definition for ‘plot’
plot.scan.gwaa: no visible global function definition for ‘points’
plot.scan.gwaa: no visible global function definition for ‘axis’
plot.scan.gwaa.2D: no visible global function definition for ‘image’
polygenic: no visible global function definition for ‘is’
polygenic: no visible global function definition for ‘gaussian’
polygenic: no visible global function definition for ‘binomial’
polygenic: no visible global function definition for ‘as’
polygenic: no visible global function definition for ‘model.frame’
polygenic: no visible binding for global variable ‘na.omit’
polygenic: no visible global function definition for ‘as.formula’
polygenic: no visible global function definition for ‘model.response’
polygenic: no visible global function definition for ‘sd’
polygenic: no visible global function definition for ‘model.matrix’
polygenic: no visible global function definition for ‘glm’
polygenic: no visible global function definition for ‘var’
polygenic: no visible global function definition for ‘ginv’
polygenic: no visible global function definition for ‘flush.console’
polygenic: no visible global function definition for ‘nlm’
polygenic: no visible global function definition for ‘optim’
polygenic: no visible global function definition for ‘runif’
polygenic_hglm: no visible global function definition for ‘gaussian’
polygenic_hglm: no visible global function definition for ‘is’
polygenic_hglm: no visible global function definition for ‘as.formula’
polygenic_hglm: no visible global function definition for ‘model.frame’
polygenic_hglm: no visible binding for global variable ‘na.omit’
polygenic_hglm: no visible global function definition for
  ‘model.response’
polygenic_hglm: no visible global function definition for
  ‘model.matrix’
polygenic_hglm: no visible global function definition for ‘hglm’
polygenic_hglm: no visible global function definition for ‘ginv’
qqplot.plot: no visible global function definition for ‘na.omit’
qqplot.plot: no visible global function definition for ‘rchisq’
qqplot.plot: no visible global function definition for ‘bitmap’
qqplot.plot: no visible global function definition for ‘qqplot’
qqplot.plot: no visible global function definition for ‘abline’
qqplot.plot: no visible global function definition for ‘dev.off’
qqplot.plot: no visible global function definition for ‘pchisq’
qtscore: no visible global function definition for ‘is’
qtscore: no visible global function definition for ‘as’
qtscore: no visible global function definition for ‘model.frame’
qtscore: no visible binding for global variable ‘na.omit’
qtscore: no visible global function definition for ‘model.response’
qtscore: no visible global function definition for ‘gaussian’
qtscore: no visible global function definition for ‘binomial’
qtscore: no visible global function definition for ‘model.matrix’
qtscore: no visible global function definition for ‘glm.fit’
qtscore: no visible global function definition for ‘residuals’
qtscore: no visible global function definition for ‘txtProgressBar’
qtscore: no visible global function definition for ‘setTxtProgressBar’
qtscore: no visible global function definition for ‘pchisq’
qtscore: no visible global function definition for ‘new’
r2fast: no visible global function definition for ‘is’
r2fast.old: no visible global function definition for ‘is’
reconstructNPs: no visible global function definition for ‘is’
redundant: no visible global function definition for ‘is’
refresh.gwaa.data: no visible global function definition for ‘is’
refresh.gwaa.data: no visible global function definition for ‘new’
rhofast: no visible global function definition for ‘is’
rntransform: no visible binding for global variable ‘gaussian’
rntransform: no visible global function definition for ‘is’
rntransform: no visible global function definition for ‘as’
rntransform: no visible global function definition for ‘qnorm’
save.gwaa.data: no visible global function definition for ‘write.table’
save.snp.data: no visible global function definition for ‘is’
scan.glm: no visible global function definition for ‘gaussian’
scan.glm: no visible global function definition for ‘is’
scan.glm: no visible global function definition for ‘as.formula’
scan.glm: no visible global function definition for ‘glm’
scan.glm: no visible global function definition for ‘anova’
scan.glm: no visible global function definition for ‘lm’
scan.glm: no visible global function definition for ‘flush.console’
scan.glm: no visible global function definition for ‘median’
scan.glm: no visible global function definition for ‘qchisq’
scan.glm.2D: no visible global function definition for ‘gaussian’
scan.glm.2D: no visible global function definition for ‘is’
scan.glm.2D: no visible global function definition for ‘as.formula’
scan.glm.2D: no visible global function definition for ‘glm’
scan.glm.2D: no visible global function definition for ‘anova’
scan.glm.2D: no visible global function definition for ‘lm’
scan.glm.2D: no visible global function definition for ‘flush.console’
scan.glm.2D: no visible global function definition for ‘median’
scan.glm.2D: no visible global function definition for ‘qchisq’
scan.haplo: no visible global function definition for ‘is’
scan.haplo: no visible global function definition for ‘as.formula’
scan.haplo: no visible global function definition for
  ‘haplo.score.slide’
scan.haplo: no visible global function definition for ‘flush.console’
scan.haplo: no visible global function definition for ‘new’
scan.haplo.2D: no visible global function definition for ‘is’
scan.haplo.2D: no visible global function definition for ‘as.formula’
scan.haplo.2D: no visible global function definition for
  ‘haplo.score.slide’
scan.haplo.2D: no visible global function definition for
  ‘score.sim.control’
scan.haplo.2D: no visible global function definition for
  ‘flush.console’
show.ncbi: no visible global function definition for ‘browseURL’
show.ncbi: no visible global function definition for ‘is’
snp.data: no visible global function definition for ‘new’
snp.names: no visible global function definition for ‘is’
snp.names.gwaa.data: no visible global function definition for ‘is’
snp.subset: no visible global function definition for ‘is’
snp.subset.scan.gwaa: no visible global function definition for ‘new’
summary.snp.data: no visible global function definition for ‘is’
summary.snp.data: no visible global function definition for ‘pchisq’
summary.snp.data_old: no visible global function definition for ‘is’
summary.snp.data_old: no visible global function definition for
  ‘pchisq’
ztransform: no visible binding for global variable ‘gaussian’
ztransform: no visible global function definition for ‘is’
ztransform: no visible global function definition for ‘as’
ztransform: no visible global function definition for ‘model.frame’
ztransform: no visible binding for global variable ‘na.pass’
ztransform: no visible global function definition for ‘complete.cases’
ztransform: no visible global function definition for ‘model.response’
ztransform: no visible global function definition for ‘model.matrix’
ztransform: no visible global function definition for ‘glm.fit’
ztransform: no visible global function definition for ‘sd’
[,gwaa.data-ANY-ANY-ANY: no visible global function definition for
  ‘new’
[,snp.coding-ANY-missing-missing: no visible global function definition
  for ‘new’
[,snp.data-ANY-ANY-ANY: no visible global function definition for ‘new’
[,snp.mx-ANY-ANY-ANY: no visible global function definition for ‘new’
[,snp.strand-ANY-missing-missing: no visible global function definition
  for ‘new’
coding<-,snp.data: no visible global function definition for ‘new’
results,scan.gwaa: no visible global function definition for ‘pchisq’
show,gwaa.data: no visible global function definition for ‘show’
show,snp.data: no visible global function definition for ‘show’
Undefined global functions or variables:
  abline anova apply2dfo as as.dist as.formula axis bartlett.test
  binomial bitmap boxplot browseURL cmdscale complete.cases databel
  density dev.off disconnect extract_text_file_columns fisher.test
  flush.console gaussian genotype get_dimnames get_temporary_file_name
  ginv glm glm.fit haplo.score.slide hglm image is kmeans kruskal.test
  ks.test lines lm median model.extract model.frame model.matrix
  model.response na.omit na.pass new nlm optim optimize par pchisq plot
  points ppoints qchisq qnorm qqplot quantile qvalue rbinom rchisq
  read.table residuals rug runif score.sim.control sd setTxtProgressBar
  set_dimnames<- show t.test text text2databel txtProgressBar var
  write.table
Consider adding
  importFrom("grDevices", "bitmap", "dev.off")
  importFrom("graphics", "abline", "axis", "boxplot", "image", "lines",
             "par", "plot", "points", "rug", "text")
  importFrom("methods", "as", "is", "new", "show")
  importFrom("stats", "anova", "as.dist", "as.formula", "bartlett.test",
             "binomial", "cmdscale", "complete.cases", "density",
             "fisher.test", "gaussian", "glm", "glm.fit", "kmeans",
             "kruskal.test", "ks.test", "lm", "median", "model.extract",
             "model.frame", "model.matrix", "model.response", "na.omit",
             "na.pass", "nlm", "optim", "optimize", "pchisq", "ppoints",
             "qchisq", "qnorm", "qqplot", "quantile", "rbinom", "rchisq",
             "residuals", "runif", "sd", "t.test", "var")
  importFrom("utils", "browseURL", "flush.console", "read.table",
             "setTxtProgressBar", "txtProgressBar", "write.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').