titan : titan.widget : widget2: warning in matrix(FALSE, nr = ngene, nc
  = 2): partial argument match of 'nr' to 'nrow'
titan : titan.widget : widget2: warning in matrix(FALSE, nr = ngene, nc
  = 2): partial argument match of 'nc' to 'ncol'
titan : titan.widget : widget2: warning in matrix(FALSE, nr = ngene, nc
  = 1): partial argument match of 'nr' to 'nrow'
titan : titan.widget : widget2: warning in matrix(FALSE, nr = ngene, nc
  = 1): partial argument match of 'nc' to 'ncol'
titan : titan.input : data.levels : dummy: warning in matrix(nr = len,
  nc = nlevels): partial argument match of 'nr' to 'nrow'
titan : titan.input : data.levels : dummy: warning in matrix(nr = len,
  nc = nlevels): partial argument match of 'nc' to 'ncol'
titan : titan.input : data.levels: warning in matrix(nr =
  length(dat$x), nc = ncontr.rx): partial argument match of 'nr' to
  'nrow'
titan : titan.input : data.levels: warning in matrix(nr =
  length(dat$x), nc = ncontr.rx): partial argument match of 'nc' to
  'ncol'
titan : titan.create.formulae: warning in matrix(NA, nr =
  input$data$levels$ngene, nc = input$data$levels$ncontr.rx + 1):
  partial argument match of 'nr' to 'nrow'
titan : titan.create.formulae: warning in matrix(NA, nr =
  input$data$levels$ngene, nc = input$data$levels$ncontr.rx + 1):
  partial argument match of 'nc' to 'ncol'
titan : titan.interpolate: warning in matrix(NA, nr =
  length(gene.valid), nc = 1 + nrx1): partial argument match of 'nr' to
  'nrow'
titan : titan.interpolate: warning in matrix(NA, nr =
  length(gene.valid), nc = 1 + nrx1): partial argument match of 'nc' to
  'ncol'
titan : titan.interpolate: warning in matrix(NA, nr = ngene1, nc =
  nrx1): partial argument match of 'nr' to 'nrow'
titan : titan.interpolate: warning in matrix(NA, nr = ngene1, nc =
  nrx1): partial argument match of 'nc' to 'ncol'
titan : titan.interpolate: warning in matrix(NA, nr = ngene0, nc =
  nrx1): partial argument match of 'nr' to 'nrow'
titan : titan.interpolate: warning in matrix(NA, nr = ngene0, nc =
  nrx1): partial argument match of 'nc' to 'ncol'
titan : titan.interpolate: warning in matrix(colMeans(log10fold.g0), nr
  = ngene1, nc = nrx1, byrow = TRUE): partial argument match of 'nr' to
  'nrow'
titan : titan.interpolate: warning in matrix(colMeans(log10fold.g0), nr
  = ngene1, nc = nrx1, byrow = TRUE): partial argument match of 'nc' to
  'ncol'
titan : titan.bootstrap : boot.fun: warning in matrix(NA, nr = ngene0,
  nc = nrx1): partial argument match of 'nr' to 'nrow'
titan : titan.bootstrap : boot.fun: warning in matrix(NA, nr = ngene0,
  nc = nrx1): partial argument match of 'nc' to 'ncol'
titan : titan.bootstrap : boot.fun: warning in matrix(NA, nr = ngene1,
  nc = nrx1): partial argument match of 'nr' to 'nrow'
titan : titan.bootstrap : boot.fun: warning in matrix(NA, nr = ngene1,
  nc = nrx1): partial argument match of 'nc' to 'ncol'
titan : titan.bootstrap : boot.fun: warning in
  matrix(colMeans(theta.star.g0), nc = nrx1, nr = ngene1, byrow =
  TRUE): partial argument match of 'nr' to 'nrow'
titan : titan.bootstrap : boot.fun: warning in
  matrix(colMeans(theta.star.g0), nc = nrx1, nr = ngene1, byrow =
  TRUE): partial argument match of 'nc' to 'ncol'
titan : titan.bootstrap.baselineonly : boot.fun: warning in matrix(NA,
  nr = (ngene1 - 1) * ngene1/2, nc = 1): partial argument match of 'nr'
  to 'nrow'
titan : titan.bootstrap.baselineonly : boot.fun: warning in matrix(NA,
  nr = (ngene1 - 1) * ngene1/2, nc = 1): partial argument match of 'nc'
  to 'ncol'
titan : print.titanboot: warning in matrix(NA, nr = len, nc = 7):
  partial argument match of 'nr' to 'nrow'
titan : print.titanboot: warning in matrix(NA, nr = len, nc = 7):
  partial argument match of 'nc' to 'ncol'