calc.auc: no visible global function definition for 'prediction'
calc.auc: no visible global function definition for 'performance'
calc.diffusionKernel: no visible global function definition for
  'graph.adjacency'
calc.diffusionKernel: no visible global function definition for
  'graph.laplacian'
calc.graph.svm: no visible global function definition for
  'as.kernelMatrix'
calc.graph.svm: no visible global function definition for 'ksvm'
calc.graph.svm: no visible global function definition for 'alphaindex'
calc.networkBasedSVM: no visible global function definition for 'lp'
compare.auc: no visible global function definition for 'prediction'
compare.auc: no visible global function definition for 'performance'
crossval: no visible global function definition for 'mclapply'
getRanking: no visible global function definition for
  'igraph.from.graphNEL'
getRanking: no visible global function definition for 'get.adjacency'
plot.pathClassResult: no visible global function definition for
  'prediction'
plot.pathClassResult: no visible global function definition for
  'performance'
predict.graphSVM: no visible global function definition for 'b'
spanbound: no visible global function definition for 'alphaindex'
spanbound: no visible global function definition for 'param'
spanbound: no visible global function definition for 'error'
spanbound: no visible global function definition for 'kernelMatrix'
spanbound: no visible global function definition for 'kernelf'
spanbound: no visible global function definition for 'b'
summarizeProbes : <anonymous>: no visible global function definition
  for 'rowMedians'
svm.fit: no visible global function definition for 'kernelMatrix'
svm.fit: no visible global function definition for 'vanilladot'
svm.fit: no visible global function definition for 'as.kernelMatrix'
svm.fit: no visible global function definition for 'ksvm'
svm.fit: no visible global function definition for 'alphaindex'
svm.predict: no visible global function definition for 'kernelMatrix'
svm.predict: no visible global function definition for 'vanilladot'
svm.predict: no visible global function definition for 'rbfdot'
svm.predict: no visible global function definition for 'b'