- using R version 4.6.1 (2026-06-24 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 14.3.0
GNU Fortran (GCC) 14.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
* current time: 2026-07-16 16:37:14 UTC
- checking for file 'vDiveR/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'vDiveR' version '2.2.0'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'vDiveR' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s] OK
- checking whether the package can be loaded with stated dependencies ... [2s] OK
- checking whether the package can be unloaded cleanly ... [2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s] OK
- checking loading without being on the library search path ... [2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [7s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [4s] ERROR
Running examples in 'vDiveR-Ex.R' failed
The error most likely occurred in:
> ### Name: plot_conservation_level
> ### Title: Conservation Levels Distribution Plot
> ### Aliases: plot_conservation_level
>
> ### ** Examples
>
> plot_conservation_level(proteins_1host, conservation_label = 1,alpha=0.8, base_size = 15)
Error in `geom_richtext()`:
! Problem while converting geom to grob.
ℹ Error occurred in the 3rd layer.
Caused by error:
! gridtext has encountered a tag that isn't supported yet: <pre>
Only a very limited number of tags are currently supported.
Backtrace:
▆
1. ├─base (local) `<fn>`(x)
2. ├─ggplot2 (local) `print.ggplot2::ggplot`(x)
3. │ ├─ggplot2::ggplot_gtable(data)
4. │ └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
5. │ └─ggplot2:::by_layer(...)
6. │ ├─rlang::try_fetch(...)
7. │ │ ├─base::tryCatch(...)
8. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
9. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
10. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
11. │ │ └─base::withCallingHandlers(...)
12. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
13. │ └─l$draw_geom(d, layout)
14. │ └─ggplot2 (local) draw_geom(..., self = self)
15. │ └─self$geom$draw_layer(...)
16. │ └─ggplot2 (local) draw_layer(..., self = self)
17. │ └─base::lapply(...)
18. │ └─ggplot2 (local) FUN(X[[i]], ...)
19. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
20. │ └─self$draw_panel(...)
21. │ └─ggtext (local) draw_panel(...)
22. │ └─gridtext::richtext_grob(...)
23. │ └─base::mapply(...)
24. │ └─gridtext (local) `<fn>`(...)
25. │ └─gridtext:::process_tags(xml2::as_list(doctree)$html$body, drawing_context)
26. │ └─gridtext:::dispatch_tag(node[[i]], tags[i], drawing_context)
27. │ └─base::stop(...)
28. └─base::.handleSimpleError(...)
29. └─rlang (local) h(simpleError(msg, call))
30. └─handlers[[1L]](cnd)
31. └─cli::cli_abort(...)
32. └─rlang::abort(...)
Execution halted
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [4s] OK
Running 'testthat.R' [4s]
- checking PDF version of manual ... [19s] OK
- checking HTML version of manual ... [4s] OK
- DONE
Status: 1 ERROR