* installing *source* package 'stLMM' ...
** this is package 'stLMM' version '0.0.3'
** package 'stLMM' successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C compiler: 'gcc.exe (GCC) 14.3.0'
using C++ compiler: 'g++.exe (GCC) 14.3.0'
using C++17
make[1]: Entering directory '/d/temp/2026_07_30_01_50_00_17551/RtmpqKZFlY/R.INSTALL155cc66bc578f/stLMM/src'
gcc -I"D:/RCompile/recent/R-4.6.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/BayesLogit/include' -I'D:/RCompile/CRANpkg/lib/4.6/Matrix/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c Matrix_stubs.c -o Matrix_stubs.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/BayesLogit/include' -I'D:/RCompile/CRANpkg/lib/4.6/Matrix/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c corModels.cpp -o corModels.o
gcc -I"D:/RCompile/recent/R-4.6.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/BayesLogit/include' -I'D:/RCompile/CRANpkg/lib/4.6/Matrix/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/BayesLogit/include' -I'D:/RCompile/CRANpkg/lib/4.6/Matrix/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nn.cpp -o nn.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/BayesLogit/include' -I'D:/RCompile/CRANpkg/lib/4.6/Matrix/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stLMM_common.cpp -o stLMM_common.o
stLMM_common.cpp: In function 'double logDetFactor(cholmod_factor*)':
stLMM_common.cpp:308:16: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long long unsigned int'} [-Wsign-compare]
308 | for(i = 0; i < L->nsuper; i++){
| ~~^~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/BayesLogit/include' -I'D:/RCompile/CRANpkg/lib/4.6/Matrix/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stLMM_covariance.cpp -o stLMM_covariance.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/BayesLogit/include' -I'D:/RCompile/CRANpkg/lib/4.6/Matrix/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stLMM_precision.cpp -o stLMM_precision.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/BayesLogit/include' -I'D:/RCompile/CRANpkg/lib/4.6/Matrix/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stLMM_predict.cpp -o stLMM_predict.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/BayesLogit/include' -I'D:/RCompile/CRANpkg/lib/4.6/Matrix/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stLMM_recover.cpp -o stLMM_recover.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/BayesLogit/include' -I'D:/RCompile/CRANpkg/lib/4.6/Matrix/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stLMM_sampler.cpp -o stLMM_sampler.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/BayesLogit/include' -I'D:/RCompile/CRANpkg/lib/4.6/Matrix/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stLMM_state.cpp -o stLMM_state.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.6.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/BayesLogit/include' -I'D:/RCompile/CRANpkg/lib/4.6/Matrix/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o
g++ -shared -s -static-libgcc -o stLMM.dll tmp.def Matrix_stubs.o corModels.o init.o nn.o stLMM_common.o stLMM_covariance.o stLMM_precision.o stLMM_predict.o stLMM_recover.o stLMM_sampler.o stLMM_state.o utils.o -fopenmp -LD:/RCompile/recent/R-4.6.1/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.6.1/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.6.1/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2026_07_30_01_50_00_17551/RtmpqKZFlY/R.INSTALL155cc66bc578f/stLMM/src'
make[1]: Entering directory '/d/temp/2026_07_30_01_50_00_17551/RtmpqKZFlY/R.INSTALL155cc66bc578f/stLMM/src'
make[1]: Leaving directory '/d/temp/2026_07_30_01_50_00_17551/RtmpqKZFlY/R.INSTALL155cc66bc578f/stLMM/src'
installing to d:/Rcompile/CRANpkg/lib/4.6/00LOCK-stLMM/00new/stLMM/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'stLMM' as stLMM_0.0.3.zip
* DONE (stLMM)