* installing *source* package 'sparta' ... ** package 'sparta' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 13.2.0' using C++11 make[1]: Entering directory '/d/temp/RtmpAbRzZf/R.INSTALL31d8c2a586af3/sparta/src' g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c converters.cpp -o converters.o converters.cpp: In function 'Rcpp::List as_cpt_(arma::Mat<short int>&, vec_dbl&, vec_str&, vec_str&)': converters.cpp:50:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 50 | for (int i = 0; i < y.size(); i++) { | ~~^~~~~~~~~~ g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c marginalize.cpp -o marginalize.o marginalize.cpp: In function 'Rcpp::List marginalize_sum_(arma::Mat<short int>&, vec_dbl&, vec_str, vec_str)': marginalize.cpp:49:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 49 | for (int k = 0; k < v.size(); k++) { | ~~^~~~~~~~~~ marginalize.cpp:17:7: warning: unused variable 'n_col_x' [-Wunused-variable] 17 | int n_col_x = xval.size(); | ^~~~~~~ marginalize.cpp: In function 'Rcpp::List marginalize_sum_2(arma::Mat<short int>&, vec_dbl&, vec_str, vec_str)': marginalize.cpp:73:7: warning: unused variable 'n_col_x' [-Wunused-variable] 73 | int n_col_x = xval.size(); | ^~~~~~~ marginalize.cpp: In function 'Rcpp::List marginalize_max_(arma::Mat<short int>&, vec_dbl&, vec_str, vec_str)': marginalize.cpp:161:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 161 | for (int k = 0; k < v.size(); k++) { | ~~^~~~~~~~~~ marginalize.cpp:131:7: warning: unused variable 'n_col_x' [-Wunused-variable] 131 | int n_col_x = xval.size(); | ^~~~~~~ g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c merge.cpp -o merge.o merge.cpp: In function 'Rcpp::List merge_disjoint_(arma::Mat<short int>&, arma::Mat<short int>&, vec_dbl&, vec_dbl&, vec_str, vec_str, std::string)': merge.cpp:27:29: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 27 | for (std::size_t i = 0; i < n_col_x; i++) { | ~~^~~~~~~~~ merge.cpp:28:31: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 28 | for (std::size_t j = 0; j < n_col_y; j++) { | ~~^~~~~~~~~ merge.cpp: In function 'Rcpp::List merge_(arma::Mat<short int>&, arma::Mat<short int>&, vec_dbl&, vec_dbl&, vec_str, vec_str, std::string)': merge.cpp:80:7: warning: unused variable 'n_yvar' [-Wunused-variable] 80 | int n_yvar = yvar.size(); | ^~~~~~ g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c misc_utils.cpp -o misc_utils.o misc_utils.cpp: In function 'umap_str_int paste_cols_from_index(arma::Mat<short int>&, arma::uvec&)': misc_utils.cpp:48:23: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 48 | for (int i = 1; i < sep_idx.size(); i++) { | ~~^~~~~~~~~~~~~~~~ misc_utils.cpp: In function 'umap_str_pair paste_marg(arma::Mat<short int>&, arma::uvec&, vec_dbl&)': misc_utils.cpp:60:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 60 | for (int i = 0; i < N; i++) { | ~~^~~ misc_utils.cpp:64:23: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 64 | for (int i = 0; i < row_idx.size(); i++) { | ~~^~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c set_ops.cpp -o set_ops.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c slice.cpp -o slice.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test_xptr.cpp -o test_xptr.o g++ -shared -s -static-libgcc -o sparta.dll tmp.def RcppExports.o converters.o marginalize.o merge.o misc_utils.o set_ops.o slice.o test_xptr.o -fopenmp -LD:/RCompile/recent/R-4.4.1/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.1/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.1/bin/x64 -lR make[1]: Leaving directory '/d/temp/RtmpAbRzZf/R.INSTALL31d8c2a586af3/sparta/src' make[1]: Entering directory '/d/temp/RtmpAbRzZf/R.INSTALL31d8c2a586af3/sparta/src' make[1]: Leaving directory '/d/temp/RtmpAbRzZf/R.INSTALL31d8c2a586af3/sparta/src' installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-sparta/00new/sparta/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'sparta' as sparta_0.8.4.zip * DONE (sparta)