* installing *source* package 'spAbundance' ...
** package 'spAbundance' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.2.0'
make[1]: Entering directory '/d/temp/Rtmp8UFXS8/R.INSTALL1f914397e48a/spAbundance/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c DS.cpp -o DS.o
DS.cpp: In function 'SEXPREC* DS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
DS.cpp:773:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
773 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
DS.cpp:203:10: note: 'sigmaSqPSamples_r' was declared here
203 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
DS.cpp:775:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
775 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
DS.cpp:204:10: note: 'alphaStarSamples_r' was declared here
204 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
DS.cpp:767:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
767 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
DS.cpp:212:10: note: 'sigmaSqMuSamples_r' was declared here
212 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
DS.cpp:769:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
769 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
DS.cpp:213:10: note: 'betaStarSamples_r' was declared here
213 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
DS.cpp:867:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
867 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
DS.cpp:235:12: note: 'tmp_0' was declared here
235 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c NMix.cpp -o NMix.o
NMix.cpp: In function 'SEXPREC* NMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
NMix.cpp:615:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
615 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
NMix.cpp:200:10: note: 'sigmaSqPSamples_r' was declared here
200 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
NMix.cpp:617:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
617 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
NMix.cpp:201:10: note: 'alphaStarSamples_r' was declared here
201 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
NMix.cpp:609:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
609 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
NMix.cpp:209:10: note: 'sigmaSqMuSamples_r' was declared here
209 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
NMix.cpp:611:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
611 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
NMix.cpp:210:10: note: 'betaStarSamples_r' was declared here
210 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
NMix.cpp:707:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
707 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
NMix.cpp:221:12: note: 'tmp_0' was declared here
221 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c abund.cpp -o abund.o
abund.cpp: In function 'SEXPREC* abund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
abund.cpp:410:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
410 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
abund.cpp:168:10: note: 'sigmaSqMuSamples_r' was declared here
168 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
abund.cpp:412:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
412 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
abund.cpp:169:10: note: 'betaStarSamples_r' was declared here
169 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c abundGaussian.cpp -o abundGaussian.o
abundGaussian.cpp: In function 'SEXPREC* abundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
abundGaussian.cpp:370:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
370 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
abundGaussian.cpp:163:10: note: 'sigmaSqMuSamples_r' was declared here
163 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
abundGaussian.cpp:372:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
372 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
abundGaussian.cpp:164:10: note: 'betaStarSamples_r' was declared here
164 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c checkAlphaDS.cpp -o checkAlphaDS.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c checkMSAlphaDS.cpp -o checkMSAlphaDS.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c idist.cpp -o idist.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.cpp -o init.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lfMsAbund.cpp -o lfMsAbund.o
lfMsAbund.cpp: In function 'SEXPREC* lfMsAbund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfMsAbund.cpp:720:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
720 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:219:10: note: 'sigmaSqMuSamples_r' was declared here
219 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:721:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
721 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:220:10: note: 'betaStarSamples_r' was declared here
220 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsAbund.cpp:806:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
806 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:228:10: note: 'kappaSamples_r' was declared here
228 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lfMsAbundGaussian.cpp -o lfMsAbundGaussian.o
lfMsAbundGaussian.cpp: In function 'SEXPREC* lfMsAbundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfMsAbundGaussian.cpp:679:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
679 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsAbundGaussian.cpp:243:10: note: 'sigmaSqMuSamples_r' was declared here
243 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsAbundGaussian.cpp:680:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
680 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsAbundGaussian.cpp:244:10: note: 'betaStarSamples_r' was declared here
244 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lfMsDS.cpp -o lfMsDS.o
lfMsDS.cpp: In function 'SEXPREC* lfMsDS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfMsDS.cpp:1152:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1152 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:277:10: note: 'sigmaSqPSamples_r' was declared here
277 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsDS.cpp:1153:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1153 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:278:10: note: 'alphaStarSamples_r' was declared here
278 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsDS.cpp:1156:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1156 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:286:10: note: 'sigmaSqMuSamples_r' was declared here
286 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsDS.cpp:1157:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1157 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:287:10: note: 'betaStarSamples_r' was declared here
287 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsDS.cpp:1259:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1259 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:294:10: note: 'kappaSamples_r' was declared here
294 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
lfMsDS.cpp:1255:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1255 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
lfMsDS.cpp:185:12: note: 'tmp_0' was declared here
185 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lfMsNMix.cpp -o lfMsNMix.o
lfMsNMix.cpp: In function 'SEXPREC* lfMsNMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
lfMsNMix.cpp:1013:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1013 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:270:10: note: 'sigmaSqPSamples_r' was declared here
270 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1014:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1014 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:271:10: note: 'alphaStarSamples_r' was declared here
271 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1017:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1017 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:279:10: note: 'sigmaSqMuSamples_r' was declared here
279 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1018:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1018 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:280:10: note: 'betaStarSamples_r' was declared here
280 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1115:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1115 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:287:10: note: 'kappaSamples_r' was declared here
287 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
lfMsNMix.cpp:1111:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1111 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
lfMsNMix.cpp:178:12: note: 'tmp_0' was declared here
178 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mkSpCov.cpp -o mkSpCov.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c msAbund.cpp -o msAbund.o
msAbund.cpp: In function 'SEXPREC* msAbund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
msAbund.cpp:526:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
526 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msAbund.cpp:199:10: note: 'sigmaSqMuSamples_r' was declared here
199 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msAbund.cpp:527:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
527 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msAbund.cpp:200:10: note: 'betaStarSamples_r' was declared here
200 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msAbund.cpp:610:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
610 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msAbund.cpp:208:10: note: 'kappaSamples_r' was declared here
208 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c msAbundGaussian.cpp -o msAbundGaussian.o
msAbundGaussian.cpp: In function 'SEXPREC* msAbundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
msAbundGaussian.cpp:499:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
499 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msAbundGaussian.cpp:217:10: note: 'sigmaSqMuSamples_r' was declared here
217 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msAbundGaussian.cpp:500:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
500 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msAbundGaussian.cpp:218:10: note: 'betaStarSamples_r' was declared here
218 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c msDS.cpp -o msDS.o
msDS.cpp: In function 'SEXPREC* msDS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
msDS.cpp:966:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
966 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msDS.cpp:258:10: note: 'sigmaSqPSamples_r' was declared here
258 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
msDS.cpp:967:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
967 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msDS.cpp:259:10: note: 'alphaStarSamples_r' was declared here
259 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
msDS.cpp:970:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
970 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msDS.cpp:267:10: note: 'sigmaSqMuSamples_r' was declared here
267 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msDS.cpp:971:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
971 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msDS.cpp:268:10: note: 'betaStarSamples_r' was declared here
268 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msDS.cpp:1071:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1071 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msDS.cpp:275:10: note: 'kappaSamples_r' was declared here
275 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
msDS.cpp:1067:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1067 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
msDS.cpp:179:12: note: 'tmp_0' was declared here
179 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c msNMix.cpp -o msNMix.o
msNMix.cpp: In function 'SEXPREC* msNMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
msNMix.cpp:829:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
829 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msNMix.cpp:250:10: note: 'sigmaSqPSamples_r' was declared here
250 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
msNMix.cpp:830:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
830 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msNMix.cpp:251:10: note: 'alphaStarSamples_r' was declared here
251 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
msNMix.cpp:833:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
833 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msNMix.cpp:259:10: note: 'sigmaSqMuSamples_r' was declared here
259 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msNMix.cpp:834:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
834 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msNMix.cpp:260:10: note: 'betaStarSamples_r' was declared here
260 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msNMix.cpp:929:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
929 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msNMix.cpp:267:10: note: 'kappaSamples_r' was declared here
267 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
msNMix.cpp:925:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
925 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
msNMix.cpp:171:12: note: 'tmp_0' was declared here
171 | double tmp_0, tmp_02;
| ^~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nn.cpp -o nn.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rpg.cpp -o rpg.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sfMsAbundGaussianNNGP.cpp -o sfMsAbundGaussianNNGP.o
sfMsAbundGaussianNNGP.cpp: In function 'SEXPREC* sfMsAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsAbundGaussianNNGP.cpp:942:53: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
942 | F77_NAME(dcopy)(&JN, yRep, &inc, &REAL(yRepSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:300:10: note: 'yRepSamples_r' was declared here
300 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:941:51: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
941 | F77_NAME(dcopy)(&JN, mu, &inc, &REAL(muSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:301:10: note: 'muSamples_r' was declared here
301 | SEXP muSamples_r;
| ^~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:943:53: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
943 | F77_NAME(dcopy)(&JN, like, &inc, &REAL(likeSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:302:10: note: 'likeSamples_r' was declared here
302 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:948:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
948 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:319:10: note: 'sigmaSqMuSamples_r' was declared here
319 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:949:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
949 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:320:10: note: 'betaStarSamples_r' was declared here
320 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sfMsAbundNNGP.cpp -o sfMsAbundNNGP.o
sfMsAbundNNGP.cpp: In function 'SEXPREC* sfMsAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsAbundNNGP.cpp:995:58: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
995 | F77_NAME(dcopy)(&nObsnSp, yRep, &inc, &REAL(yRepSamples_r)[sPost*nObsnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:268:10: note: 'yRepSamples_r' was declared here
268 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundNNGP.cpp:996:56: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
996 | F77_NAME(dcopy)(&nObsnSp, mu, &inc, &REAL(muSamples_r)[sPost*nObsnSp], &inc);
| ~~~~^~~~~~~~~~~~~
sfMsAbundNNGP.cpp:269:10: note: 'muSamples_r' was declared here
269 | SEXP muSamples_r;
| ^~~~~~~~~~~
sfMsAbundNNGP.cpp:997:58: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
997 | F77_NAME(dcopy)(&nObsnSp, like, &inc, &REAL(likeSamples_r)[sPost*nObsnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:270:10: note: 'likeSamples_r' was declared here
270 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundNNGP.cpp:1004:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1004 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:287:10: note: 'sigmaSqMuSamples_r' was declared here
287 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:1005:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1005 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:288:10: note: 'betaStarSamples_r' was declared here
288 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:1097:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1097 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:296:10: note: 'kappaSamples_r' was declared here
296 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sfMsAbundNNGPPredict.cpp -o sfMsAbundNNGPPredict.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sfMsDSNNGP.cpp -o sfMsDSNNGP.o
sfMsDSNNGP.cpp: In function 'SEXPREC* sfMsDSNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsDSNNGP.cpp:1428:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1428 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:341:10: note: 'sigmaSqPSamples_r' was declared here
341 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1429:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1429 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:342:10: note: 'alphaStarSamples_r' was declared here
342 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1432:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1432 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:350:10: note: 'sigmaSqMuSamples_r' was declared here
350 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1433:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1433 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:351:10: note: 'betaStarSamples_r' was declared here
351 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1542:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1542 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:358:10: note: 'kappaSamples_r' was declared here
358 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1538:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1538 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
sfMsDSNNGP.cpp:243:12: note: 'tmp_0' was declared here
243 | double tmp_0, tmp_02;
| ^~~~~
sfMsDSNNGP.cpp:1568:21: warning: 'tmp_02' may be used uninitialized [-Wmaybe-uninitialized]
1568 | SET_VECTOR_ELT(resultName_r, tmp_02, mkChar("kappa.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:243:19: note: 'tmp_02' was declared here
243 | double tmp_0, tmp_02;
| ^~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sfMsNMixNNGP.cpp -o sfMsNMixNNGP.o
sfMsNMixNNGP.cpp: In function 'SEXPREC* sfMsNMixNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
sfMsNMixNNGP.cpp:1289:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1289 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:335:10: note: 'sigmaSqPSamples_r' was declared here
335 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1290:65: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1290 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:336:10: note: 'alphaStarSamples_r' was declared here
336 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1293:64: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1293 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:344:10: note: 'sigmaSqMuSamples_r' was declared here
344 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1294:66: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1294 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:345:10: note: 'betaStarSamples_r' was declared here
345 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1398:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1398 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:352:10: note: 'kappaSamples_r' was declared here
352 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1394:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1394 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
sfMsNMixNNGP.cpp:237:12: note: 'tmp_0' was declared here
237 | double tmp_0, tmp_02;
| ^~~~~
sfMsNMixNNGP.cpp:1421:21: warning: 'tmp_02' may be used uninitialized [-Wmaybe-uninitialized]
1421 | SET_VECTOR_ELT(resultName_r, tmp_02, mkChar("kappa.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:237:19: note: 'tmp_02' was declared here
237 | double tmp_0, tmp_02;
| ^~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sfMsNMixNNGPPredict.cpp -o sfMsNMixNNGPPredict.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spAbundGaussianNNGP.cpp -o spAbundGaussianNNGP.o
spAbundGaussianNNGP.cpp: In function 'SEXPREC* spAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spAbundGaussianNNGP.cpp:662:52: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
662 | F77_NAME(dcopy)(&J, yRep, &inc, &REAL(yRepSamples_r)[sPost*J], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:229:10: note: 'yRepSamples_r' was declared here
229 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:663:60: warning: 'yRepZeroSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
663 | F77_NAME(dcopy)(&JZero, yRepZero, &inc, &REAL(yRepZeroSamples_r)[sPost*JZero], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:230:10: note: 'yRepZeroSamples_r' was declared here
230 | SEXP yRepZeroSamples_r;
| ^~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:664:50: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
664 | F77_NAME(dcopy)(&J, mu, &inc, &REAL(muSamples_r)[sPost*J], &inc);
| ~~~~^~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:231:10: note: 'muSamples_r' was declared here
231 | SEXP muSamples_r;
| ^~~~~~~~~~~
spAbundGaussianNNGP.cpp:666:36: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
666 | &REAL(likeSamples_r)[sPost*J], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:232:10: note: 'likeSamples_r' was declared here
232 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:670:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
670 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:247:10: note: 'sigmaSqMuSamples_r' was declared here
247 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:672:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
672 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:248:10: note: 'betaStarSamples_r' was declared here
248 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spAbundNNGP.cpp -o spAbundNNGP.o
spAbundNNGP.cpp: In function 'SEXPREC* spAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spAbundNNGP.cpp:759:55: warning: 'yRepSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
759 | F77_NAME(dcopy)(&nObs, yRep, &inc, &REAL(yRepSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundNNGP.cpp:222:10: note: 'yRepSamples_r' was declared here
222 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
spAbundNNGP.cpp:758:53: warning: 'muSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
758 | F77_NAME(dcopy)(&nObs, mu, &inc, &REAL(muSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~
spAbundNNGP.cpp:223:10: note: 'muSamples_r' was declared here
223 | SEXP muSamples_r;
| ^~~~~~~~~~~
spAbundNNGP.cpp:761:36: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
761 | &REAL(likeSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundNNGP.cpp:224:10: note: 'likeSamples_r' was declared here
224 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
spAbundNNGP.cpp:860:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
860 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:236:10: note: 'kappaSamples_r' was declared here
236 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
spAbundNNGP.cpp:770:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
770 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:242:10: note: 'sigmaSqMuSamples_r' was declared here
242 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:772:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
772 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:243:10: note: 'betaStarSamples_r' was declared here
243 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spAbundNNGPPredict.cpp -o spAbundNNGPPredict.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spDSNNGP.cpp -o spDSNNGP.o
spDSNNGP.cpp: In function 'SEXPREC* spDSNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spDSNNGP.cpp:1234:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1234 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:260:10: note: 'kappaSamples_r' was declared here
260 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
spDSNNGP.cpp:1127:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1127 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:272:10: note: 'sigmaSqPSamples_r' was declared here
272 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1129:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1129 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:273:10: note: 'alphaStarSamples_r' was declared here
273 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1121:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1121 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:281:10: note: 'sigmaSqMuSamples_r' was declared here
281 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1123:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1123 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:282:10: note: 'betaStarSamples_r' was declared here
282 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1230:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1230 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
spDSNNGP.cpp:304:12: note: 'tmp_0' was declared here
304 | double tmp_0, tmp_02;
| ^~~~~
spDSNNGP.cpp:1255:21: warning: 'tmp_02' may be used uninitialized [-Wmaybe-uninitialized]
1255 | SET_VECTOR_ELT(resultName_r, tmp_02, mkChar("kappa.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:304:19: note: 'tmp_02' was declared here
304 | double tmp_0, tmp_02;
| ^~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spNMixNNGP.cpp -o spNMixNNGP.o
spNMixNNGP.cpp: In function 'SEXPREC* spNMixNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
spNMixNNGP.cpp:1075:21: warning: 'kappaSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1075 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:258:10: note: 'kappaSamples_r' was declared here
258 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
spNMixNNGP.cpp:975:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
975 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:270:10: note: 'sigmaSqPSamples_r' was declared here
270 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:977:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
977 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:271:10: note: 'alphaStarSamples_r' was declared here
271 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:969:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
969 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:279:10: note: 'sigmaSqMuSamples_r' was declared here
279 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:971:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
971 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:280:10: note: 'betaStarSamples_r' was declared here
280 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:1071:16: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized]
1071 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
spNMixNNGP.cpp:291:12: note: 'tmp_0' was declared here
291 | double tmp_0, tmp_02;
| ^~~~~
spNMixNNGP.cpp:1092:21: warning: 'tmp_02' may be used uninitialized [-Wmaybe-uninitialized]
1092 | SET_VECTOR_ELT(resultName_r, tmp_02, mkChar("kappa.samples"));
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:291:19: note: 'tmp_02' was declared here
291 | double tmp_0, tmp_02;
| ^~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spNMixNNGPPredict.cpp -o spNMixNNGPPredict.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcAbundNNGP.cpp -o svcAbundNNGP.o
svcAbundNNGP.cpp: In function 'SEXPREC* svcAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcAbundNNGP.cpp:713:34: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
713 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:243:10: note: 'sigmaSqMuSamples_r' was declared here
243 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:715:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
715 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:244:10: note: 'betaStarSamples_r' was declared here
244 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:582:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized]
582 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet)
| ^~~
svcAbundNNGP.cpp:330:12: note: 'logDet' was declared here
330 | double logDet;
| ^~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcAbundNNGPPredict.cpp -o svcAbundNNGPPredict.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcMsAbundGaussianNNGP.cpp -o svcMsAbundGaussianNNGP.o
svcMsAbundGaussianNNGP.cpp: In function 'SEXPREC* svcMsAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
svcMsAbundGaussianNNGP.cpp:1030:59: warning: 'sigmaSqMuSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1030 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcMsAbundGaussianNNGP.cpp:320:10: note: 'sigmaSqMuSamples_r' was declared here
320 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcMsAbundGaussianNNGP.cpp:1031:59: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized]
1031 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcMsAbundGaussianNNGP.cpp:321:10: note: 'betaStarSamples_r' was declared here
321 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcMsAbundGaussianNNGPPredict.cpp -o svcMsAbundGaussianNNGPPredict.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c util.cpp -o util.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c waicAbund.cpp -o waicAbund.o
g++ -std=gnu++17 -shared -s -static-libgcc -o spAbundance.dll tmp.def DS.o NMix.o abund.o abundGaussian.o checkAlphaDS.o checkMSAlphaDS.o idist.o init.o lfMsAbund.o lfMsAbundGaussian.o lfMsDS.o lfMsNMix.o mkSpCov.o msAbund.o msAbundGaussian.o msDS.o msNMix.o nn.o rpg.o sfMsAbundGaussianNNGP.o sfMsAbundNNGP.o sfMsAbundNNGPPredict.o sfMsDSNNGP.o sfMsNMixNNGP.o sfMsNMixNNGPPredict.o spAbundGaussianNNGP.o spAbundNNGP.o spAbundNNGPPredict.o spDSNNGP.o spNMixNNGP.o spNMixNNGPPredict.o svcAbundNNGP.o svcAbundNNGPPredict.o svcMsAbundGaussianNNGP.o svcMsAbundGaussianNNGPPredict.o util.o waicAbund.o -LD:/RCompile/recent/R-4.4.0/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.0/bin/x64 -lRblas -lgfortran -lm -lquadmath -fopenmp -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.0/bin/x64 -lR
make[1]: Leaving directory '/d/temp/Rtmp8UFXS8/R.INSTALL1f914397e48a/spAbundance/src'
make[1]: Entering directory '/d/temp/Rtmp8UFXS8/R.INSTALL1f914397e48a/spAbundance/src'
make[1]: Leaving directory '/d/temp/Rtmp8UFXS8/R.INSTALL1f914397e48a/spAbundance/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-spAbundance/00new/spAbundance/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'spAbundance' as spAbundance_0.1.3.zip
* DONE (spAbundance)