* installing *source* package 'sorcering' ...
** this is package 'sorcering' version '1.2.0'
** package 'sorcering' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.2.0'
make[1]: Entering directory '/d/temp/2025_10_06_01_50_00_7952/Rtmpo1PUNa/R.INSTALL4f084b2d7f9f/sorcering/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sorcering.cpp -o sorcering.o
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:32,
from sorcering.cpp:4:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
sorcering.cpp: In function 'Rcpp::List sorcering(Rcpp::Nullable<Rcpp::Matrix<14>&>, const Rcpp::String&, Rcpp::Nullable<Rcpp::Vector<14, Rcpp::PreserveStorage>&>, Rcpp::Nullable<Rcpp::Vector<14, Rcpp::PreserveStorage>&>, Rcpp::Nullable<SEXPREC**>, Rcpp::Nullable<SEXPREC**>, Rcpp::Nullable<Rcpp::Vector<19>&>, Rcpp::Nullable<Rcpp::Vector<19>&>, Rcpp::Nullable<Rcpp::Vector<14, Rcpp::PreserveStorage>&>, Rcpp::Nullable<SEXPREC**>, Rcpp::Nullable<Rcpp::Matrix<14>&>, Rcpp::Nullable<Rcpp::Vector<14, Rcpp::PreserveStorage>&>, Rcpp::Nullable<SEXPREC**>, Rcpp::Nullable<Rcpp::Vector<14, Rcpp::PreserveStorage>&>, int, Rcpp::Nullable<Rcpp::Matrix<14>&>, Rcpp::Nullable<Rcpp::Vector<19>&>, Rcpp::Nullable<Rcpp::Vector<19>&>, Rcpp::Nullable<Rcpp::Vector<19>&>, Rcpp::Nullable<Rcpp::Vector<19>&>, Rcpp::Nullable<Rcpp::Vector<19>&>, Rcpp::Nullable<Rcpp::Vector<19>&>, Rcpp::Nullable<Rcpp::Vector<19>&>, Rcpp::Nullable<Rcpp::Vector<19>&>, Rcpp::Nullable<Rcpp::Vector<19>&>, Rcpp::Nullable<Rcpp::Vector<19>&>, Rcpp::Nullable<Rcpp::Vector<19>&>, Rcpp::Nullable<Rcpp::Vector<19>&>, Rcpp::Nullable<Rcpp::Vector<19>&>, bool, bool, bool, bool, bool, bool, bool, const Rcpp::NumericVector&, Rcpp::Nullable<Rcpp::Vector<14, Rcpp::PreserveStorage>&>, bool, Rcpp::Nullable<Rcpp::Vector<13>&>, int, int, Rcpp::Nullable<Rcpp::Vector<14, Rcpp::PreserveStorage>&>, Rcpp::Nullable<Rcpp::Vector<19>&>, Rcpp::Nullable<Rcpp::Vector<19>&>, Rcpp::Nullable<Rcpp::Vector<19>&>, bool, const Rcpp::String&, bool, int, Rcpp::List)':
sorcering.cpp:1198:57: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
1198 | if (RothC_dpmrpm_arma.n_elem<(list_length) && model.get_cstring()==rothc && RothC_dpmrpm_arma.n_elem>1) c3c +=("Fewer RothC_dpmrpm arguments than sites!");
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
sorcering.cpp:2294:96: warning: 'static out_eT arma::conv_to<out_eT>::from(const arma::Base<eT2, expr>&, const typename arma::arma_not_cx<in_eT>::result*) [with in_eT = double; T1 = arma::eGlue<arma::subview_elem1<double, arma::mtOp<unsigned int, arma::mtOp<unsigned int, arma::Col<double>, arma::op_rel_eq>, arma::op_find> >, arma::subview_elem1<double, arma::mtOp<unsigned int, arma::mtOp<unsigned int, arma::Col<double>, arma::op_rel_eq>, arma::op_find> >, arma::eglue_div>; out_eT = double; typename arma::arma_not_cx<in_eT>::result = double]' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
2294 | CNbio = arma::conv_to<double>::from( C0_arma.elem(find(pt_arma==2,1))/N0_arma.elem(find(pt_arma==2,1)) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo:496:
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:72:1: note: declared here
72 | conv_to<out_eT>::from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk)
| ^~~~~~~~~~~~~~~
sorcering.cpp:2329:99: warning: 'static out_eT arma::conv_to<out_eT>::from(const arma::Base<eT2, expr>&, const typename arma::arma_not_cx<in_eT>::result*) [with in_eT = double; T1 = arma::eGlue<arma::subview_elem1<double, arma::mtOp<unsigned int, arma::mtOp<unsigned int, arma::Col<double>, arma::op_rel_eq>, arma::op_find> >, arma::subview_elem1<double, arma::mtOp<unsigned int, arma::mtOp<unsigned int, arma::Col<double>, arma::op_rel_eq>, arma::op_find> >, arma::eglue_div>; out_eT = double; typename arma::arma_not_cx<in_eT>::result = double]' is deprecated: replace conv_to<...>::from(X) with as_scalar(X) [-Wdeprecated-declarations]
2329 | double CNres = arma::conv_to<double>::from( C0_arma.elem(find(pt_arma==3,1)) / N0_arma.elem(find(pt_arma==3,1)) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/current/armadillo_bits/fn_conv_to.hpp:72:1: note: declared here
72 | conv_to<out_eT>::from(const Base<in_eT, T1>& in, const typename arma_not_cx<in_eT>::result* junk)
| ^~~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o sorcering.dll tmp.def RcppExports.o sorcering.o -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.1/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_10_06_01_50_00_7952/Rtmpo1PUNa/R.INSTALL4f084b2d7f9f/sorcering/src'
make[1]: Entering directory '/d/temp/2025_10_06_01_50_00_7952/Rtmpo1PUNa/R.INSTALL4f084b2d7f9f/sorcering/src'
make[1]: Leaving directory '/d/temp/2025_10_06_01_50_00_7952/Rtmpo1PUNa/R.INSTALL4f084b2d7f9f/sorcering/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-sorcering/00new/sorcering/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'sorcering' as sorcering_1.2.0.zip
* DONE (sorcering)