• using R version 4.5.2 (2025-10-31 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 14.3.0     GNU Fortran (GCC) 14.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'searchAnalyzeR/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'searchAnalyzeR' version '0.1.0'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'searchAnalyzeR' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s] OK
• checking whether the package can be unloaded cleanly ... [2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s] OK
• checking loading without being on the library search path ... [2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s] OK
• checking Rd files ... [2s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [7s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [13s] OK   Running 'testthat.R' [13s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [9s] ERROR Error(s) in re-building vignettes: --- re-building 'Comparing_Search_Strategies_with_searchAnalyzeR.Rmd' using rmarkdown Quitting from Comparing_Search_Strategies_with_searchAnalyzeR.Rmd:130-150 [execute_searches] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! 1: Opening and ending tag mismatch: br line 47 and p 2: Opening and ending tag mismatch: br line 47 and section 3: Opening and ending tag mismatch: p line 44 and main 4: Opening and ending tag mismatch: br line 180 and a 5: Opening and ending tag mismatch: a line 180 and p 6: Opening and ending tag mismatch: br line 179 and div 7: Opening and ending tag mismatch: br line 185 and p 8: Opening and ending tag mismatch: br line 184 and div 9: Opening and ending tag mismatch: br line 190 and p 10: Opening and ending tag mismatch: br line 189 and div 11: Opening and ending tag mismatch: p line 189 and div 12: Opening and ending tag mismatch: p line 184 and section 13: Opening and ending tag mismatch: div line 183 and footer 14: Opening and ending tag mismatch: p line 179 and body 15: Opening and ending tag mismatch: div line 178 and html --- Backtrace:     ▆  1. ├─searchAnalyzeR::search_pubmed(...)  2. │ └─rentrez::entrez_search(...)  3. │ └─rentrez:::parse_response(response, retmode)  4. │ └─XML::xmlTreeParse(x, useInternalNodes = TRUE)  5. └─XML (local) `<fn>`(`<chr>`) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Comparing_Search_Strategies_with_searchAnalyzeR.Rmd' failed with diagnostics: 1: Opening and ending tag mismatch: br line 47 and p 2: Opening and ending tag mismatch: br line 47 and section 3: Opening and ending tag mismatch: p line 44 and main 4: Opening and ending tag mismatch: br line 180 and a 5: Opening and ending tag mismatch: a line 180 and p 6: Opening and ending tag mismatch: br line 179 and div 7: Opening and ending tag mismatch: br line 185 and p 8: Opening and ending tag mismatch: br line 184 and div 9: Opening and ending tag mismatch: br line 190 and p 10: Opening and ending tag mismatch: br line 189 and div 11: Opening and ending tag mismatch: p line 189 and div 12: Opening and ending tag mismatch: p line 184 and section 13: Opening and ending tag mismatch: div line 183 and footer 14: Opening and ending tag mismatch: p line 179 and body 15: Opening and ending tag mismatch: div line 178 and html --- failed re-building 'Comparing_Search_Strategies_with_searchAnalyzeR.Rmd' --- re-building 'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd' using rmarkdown Quitting from Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd:106-117 [execute-search] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! 1: Opening and ending tag mismatch: br line 47 and p 2: Opening and ending tag mismatch: br line 47 and section 3: Opening and ending tag mismatch: p line 44 and main 4: Opening and ending tag mismatch: br line 180 and a 5: Opening and ending tag mismatch: a line 180 and p 6: Opening and ending tag mismatch: br line 179 and div 7: Opening and ending tag mismatch: br line 185 and p 8: Opening and ending tag mismatch: br line 184 and div 9: Opening and ending tag mismatch: br line 190 and p 10: Opening and ending tag mismatch: br line 189 and div 11: Opening and ending tag mismatch: p line 189 and div 12: Opening and ending tag mismatch: p line 184 and section 13: Opening and ending tag mismatch: div line 183 and footer 14: Opening and ending tag mismatch: p line 179 and body 15: Opening and ending tag mismatch: div line 178 and html --- Backtrace:     ▆  1. ├─searchAnalyzeR::search_pubmed(...)  2. │ └─rentrez::entrez_search(...)  3. │ └─rentrez:::parse_response(response, retmode)  4. │ └─XML::xmlTreeParse(x, useInternalNodes = TRUE)  5. └─XML (local) `<fn>`(`<chr>`) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd' failed with diagnostics: 1: Opening and ending tag mismatch: br line 47 and p 2: Opening and ending tag mismatch: br line 47 and section 3: Opening and ending tag mismatch: p line 44 and main 4: Opening and ending tag mismatch: br line 180 and a 5: Opening and ending tag mismatch: a line 180 and p 6: Opening and ending tag mismatch: br line 179 and div 7: Opening and ending tag mismatch: br line 185 and p 8: Opening and ending tag mismatch: br line 184 and div 9: Opening and ending tag mismatch: br line 190 and p 10: Opening and ending tag mismatch: br line 189 and div 11: Opening and ending tag mismatch: p line 189 and div 12: Opening and ending tag mismatch: p line 184 and section 13: Opening and ending tag mismatch: div line 183 and footer 14: Opening and ending tag mismatch: p line 179 and body 15: Opening and ending tag mismatch: div line 178 and html --- failed re-building 'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd' SUMMARY: processing the following files failed:   'Comparing_Search_Strategies_with_searchAnalyzeR.Rmd'   'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd' Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [21s] OK
• checking HTML version of manual ... [15s] OK
• DONE

Status: 1 ERROR