* installing *source* package 'ribiosUtils' ... ** this is package 'ribiosUtils' version '1.7.7' ** package 'ribiosUtils' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 14.3.0' make[1]: Entering directory '/d/temp/2026_02_06_01_50_00_22359/Rtmpc7OUWE/R.INSTALL1383c2f0272df/ribiosUtils/src' gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c affyfileHandler.c -o affyfileHandler.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c algutil.c -o algutil.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c alphatrans.c -o alphatrans.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c arg.c -o arg.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c array.c -o array.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c avlTree.c -o avlTree.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c binalgparser.c -o binalgparser.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c bitmap.c -o bitmap.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c biurl.c -o biurl.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c blastdb.c -o blastdb.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c blastparser.c -o blastparser.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c chemutil.c -o chemutil.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c combi.c -o combi.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c eval.c -o eval.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c forest.c -o forest.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c format.c -o format.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c fuzzparser.c -o fuzzparser.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c geometry.c -o geometry.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c graphalgo.c -o graphalgo.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c graphics.c -o graphics.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c hash.c -o hash.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c hierclus.c -o hierclus.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c hlrmisc.c -o hlrmisc.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c hmmparser.c -o hmmparser.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c html.c -o html.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c htmlform.c -o htmlform.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c linestream.c -o linestream.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c lnk.c -o lnk.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c log.c -o log.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c matvec.c -o matvec.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c msfparser.c -o msfparser.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c pagedesign.c -o pagedesign.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c patternmatch.c -o patternmatch.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c pearsonfastaparser.c -o pearsonfastaparser.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c phraplightparser.c -o phraplightparser.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c plabla.c -o plabla.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c primer3parser.c -o primer3parser.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c properties.c -o properties.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c pwdecode.c -o pwdecode.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c r_endec.c -o r_endec.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c r_mmatch.c -o r_mmatch.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c r_trim.c -o r_trim.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c rdbu.c -o rdbu.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c recipes.c -o recipes.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c seqautil.c -o seqautil.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c sequenceAlignment.c -o sequenceAlignment.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c sequtil.c -o sequtil.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c statistics.c -o statistics.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c stringlist.c -o stringlist.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c wiseparser.c -o wiseparser.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c wwwsession.c -o wwwsession.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c xmlbuilder.c -o xmlbuilder.o gcc -I"D:/RCompile/recent/R-4.5.2/include" -DNDEBUG -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -I../inst/include -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x -mfpmath=sse -msse2 -mstackrealign -c xmlparser.c -o xmlparser.o gcc -shared -s -static-libgcc -o ribiosUtils.dll tmp.def affyfileHandler.o algutil.o alphatrans.o arg.o array.o avlTree.o binalgparser.o bitmap.o biurl.o blastdb.o blastparser.o chemutil.o combi.o eval.o forest.o format.o fuzzparser.o geometry.o graphalgo.o graphics.o hash.o hierclus.o hlrmisc.o hmmparser.o html.o htmlform.o init.o linestream.o lnk.o log.o matvec.o msfparser.o pagedesign.o patternmatch.o pearsonfastaparser.o phraplightparser.o plabla.o primer3parser.o properties.o pwdecode.o r_endec.o r_mmatch.o r_trim.o rdbu.o recipes.o seqautil.o sequenceAlignment.o sequtil.o statistics.o stringlist.o wiseparser.o wwwsession.o xmlbuilder.o xmlparser.o -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.2/bin/x64 -lR make[1]: Leaving directory '/d/temp/2026_02_06_01_50_00_22359/Rtmpc7OUWE/R.INSTALL1383c2f0272df/ribiosUtils/src' make[1]: Entering directory '/d/temp/2026_02_06_01_50_00_22359/Rtmpc7OUWE/R.INSTALL1383c2f0272df/ribiosUtils/src' make[1]: Leaving directory '/d/temp/2026_02_06_01_50_00_22359/Rtmpc7OUWE/R.INSTALL1383c2f0272df/ribiosUtils/src' installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-ribiosUtils/00new/ribiosUtils/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'ribiosUtils' as ribiosUtils_1.7.7.zip * DONE (ribiosUtils)