* installing *source* package 'qtlpoly' ...
** package 'qtlpoly' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2024_12_08_01_50_01_8405/RtmpCy4gf4/R.INSTALL15dec17db3176/qtlpoly/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppProgress/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c MNR.cpp -o MNR.o
MNR.cpp: In function 'arma::vec varCols(const arma::mat&)':
MNR.cpp:111:19: warning: 'n' may be used uninitialized [-Wmaybe-uninitialized]
  111 |     out(j) = M2/(n-1);
      |                 ~~^~~
MNR.cpp:101:9: note: 'n' was declared here
  101 |     int n;
      |         ^
MNR.cpp: In function 'Rcpp::List MNR(const arma::mat&, const Rcpp::List&, const Rcpp::List&, const Rcpp::List&, const Rcpp::List&, const Rcpp::List&, const Rcpp::List&, const Rcpp::List&, const arma::vec&, int, double, double, const bool&, const bool&, const bool&, const bool&, const arma::vec&, const arma::vec&)':
MNR.cpp:753:36: warning: 'cycle2' may be used uninitialized [-Wmaybe-uninitialized]
  753 |   arma::mat monitor2 = monitor.cols(0, cycle2);
      |                        ~~~~~~~~~~~~^~~~~~~~~~~
MNR.cpp:375:14: note: 'cycle2' was declared here
  375 |   int cycle, cycle2;
      |              ^~~~~~
MNR.cpp:744:20: warning: 'llik' may be used uninitialized [-Wmaybe-uninitialized]
  744 |   double AIC = (-2 * llik) + (2 * Xm.n_cols);
      |                ~~~~^~~~~~~
MNR.cpp:376:16: note: 'llik' was declared here
  376 |   double ldet, llik, llik0, delta_llik, checkP, seconds; // to store likelihoods and determinants
      |                ^~~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.2/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppProgress/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -shared -s -static-libgcc -o qtlpoly.dll tmp.def MNR.o RcppExports.o -fopenmp -LD:/RCompile/recent/R-4.4.2/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.2/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.2/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2024_12_08_01_50_01_8405/RtmpCy4gf4/R.INSTALL15dec17db3176/qtlpoly/src'
make[1]: Entering directory '/d/temp/2024_12_08_01_50_01_8405/RtmpCy4gf4/R.INSTALL15dec17db3176/qtlpoly/src'
make[1]: Leaving directory '/d/temp/2024_12_08_01_50_01_8405/RtmpCy4gf4/R.INSTALL15dec17db3176/qtlpoly/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-qtlpoly/00new/qtlpoly/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'qtlpoly' as qtlpoly_0.2.4.zip
* DONE (qtlpoly)