- using R version 4.4.0 (2024-04-24 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'pharmr/DESCRIPTION' ... OK
- this is package 'pharmr' version '0.96.0'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'pharmr' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s] OK
- checking whether the package can be loaded with stated dependencies ... [2s] OK
- checking whether the package can be unloaded cleanly ... [2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s] OK
- checking loading without being on the library search path ... [2s] OK
- checking whether startup messages can be suppressed ... [2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [8s] OK
- checking Rd files ... [2s] NOTE
checkRd: (-1) add_covariate_effect.Rd:44: Lost braces; missing escapes or markup?
44 | {coveff} = 1 + {theta} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:44: Lost braces; missing escapes or markup?
44 | {coveff} = 1 + {theta} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:44: Lost braces; missing escapes or markup?
44 | {coveff} = 1 + {theta} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:44: Lost braces; missing escapes or markup?
44 | {coveff} = 1 + {theta} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:60: Lost braces; missing escapes or markup?
60 | {coveff} = 1
| ^
checkRd: (-1) add_covariate_effect.Rd:67: Lost braces; missing escapes or markup?
67 | {coveff} = 1 + {theta}
| ^
checkRd: (-1) add_covariate_effect.Rd:67: Lost braces; missing escapes or markup?
67 | {coveff} = 1 + {theta}
| ^
checkRd: (-1) add_covariate_effect.Rd:79: Lost braces; missing escapes or markup?
79 | {coveff} = 1 + {theta1} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:79: Lost braces; missing escapes or markup?
79 | {coveff} = 1 + {theta1} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:79: Lost braces; missing escapes or markup?
79 | {coveff} = 1 + {theta1} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:79: Lost braces; missing escapes or markup?
79 | {coveff} = 1 + {theta1} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:86: Lost braces; missing escapes or markup?
86 | {coveff} = 1 + {theta2} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:86: Lost braces; missing escapes or markup?
86 | {coveff} = 1 + {theta2} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:86: Lost braces; missing escapes or markup?
86 | {coveff} = 1 + {theta2} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:86: Lost braces; missing escapes or markup?
86 | {coveff} = 1 + {theta2} * ({cov} - {median})
| ^
checkRd: (-1) add_covariate_effect.Rd:101: Lost braces; missing escapes or markup?
101 | {coveff} = exp({theta} * ({cov} - {median}))
| ^
checkRd: (-1) add_covariate_effect.Rd:101: Lost braces; missing escapes or markup?
101 | {coveff} = exp({theta} * ({cov} - {median}))
| ^
checkRd: (-1) add_covariate_effect.Rd:101: Lost braces; missing escapes or markup?
101 | {coveff} = exp({theta} * ({cov} - {median}))
| ^
checkRd: (-1) add_covariate_effect.Rd:101: Lost braces; missing escapes or markup?
101 | {coveff} = exp({theta} * ({cov} - {median}))
| ^
checkRd: (-1) add_covariate_effect.Rd:114: Lost braces
114 | min(frac{log(0.01)}{{min} - {median}},
| ^
checkRd: (-1) add_covariate_effect.Rd:114: Lost braces
114 | min(frac{log(0.01)}{{min} - {median}},
| ^
checkRd: (-1) add_covariate_effect.Rd:114: Lost braces; missing escapes or markup?
114 | min(frac{log(0.01)}{{min} - {median}},
| ^
checkRd: (-1) add_covariate_effect.Rd:115: Lost braces
115 | frac{log(100)}{{max} - {median}})
| ^
checkRd: (-1) add_covariate_effect.Rd:115: Lost braces
115 | frac{log(100)}{{max} - {median}})
| ^
checkRd: (-1) add_covariate_effect.Rd:115: Lost braces; missing escapes or markup?
115 | frac{log(100)}{{max} - {median}})
| ^
checkRd: (-1) add_covariate_effect.Rd:124: Lost braces
124 | max(frac{log(0.01)}{{max} - {median}},
| ^
checkRd: (-1) add_covariate_effect.Rd:124: Lost braces
124 | max(frac{log(0.01)}{{max} - {median}},
| ^
checkRd: (-1) add_covariate_effect.Rd:124: Lost braces; missing escapes or markup?
124 | max(frac{log(0.01)}{{max} - {median}},
| ^
checkRd: (-1) add_covariate_effect.Rd:125: Lost braces
125 | frac{log(100)}{{min} - {median}})
| ^
checkRd: (-1) add_covariate_effect.Rd:125: Lost braces
125 | frac{log(100)}{{min} - {median}})
| ^
checkRd: (-1) add_covariate_effect.Rd:125: Lost braces; missing escapes or markup?
125 | frac{log(100)}{{min} - {median}})
| ^
checkRd: (-1) add_covariate_effect.Rd:133: Lost braces; missing escapes or markup?
133 | {coveff} = (frac{{cov}}{{median}})^{theta}
| ^
checkRd: (-1) add_covariate_effect.Rd:133: Lost braces
133 | {coveff} = (frac{{cov}}{{median}})^{theta}
| ^
checkRd: (-1) add_covariate_effect.Rd:133: Lost braces
133 | {coveff} = (frac{{cov}}{{median}})^{theta}
| ^
checkRd: (-1) add_covariate_effect.Rd:133: Lost braces; missing escapes or markup?
133 | {coveff} = (frac{{cov}}{{median}})^{theta}
| ^
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from 'inst/doc' ... OK
- checking examples ... [33s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [3s] OK
Running 'testthat.R' [3s]
- checking PDF version of manual ... [34s] OK
- checking HTML version of manual ... [31s] OK
- DONE
Status: 1 NOTE