* installing *source* package 'nonmem2rx' ...
** package 'nonmem2rx' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
using C++ compiler: 'g++.exe (GCC) 13.2.0'
make[1]: Entering directory '/d/temp/RtmpQVNlpJ/R.INSTALLc1e014c92a28/nonmem2rx/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c abbrec.c -o abbrec.o
In file included from dparser3.h:10,
from abbrec.c:9:
D:/RCompile/CRANpkg/lib/4.4/dparser/include/d.h:7: warning: "__USE_MINGW_ANSI_STDIO" redefined
7 | #define __USE_MINGW_ANSI_STDIO 1
|
In file included from D:/rtools44/x86_64-w64-mingw32.static.posix/include/corecrt.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/crtdefs.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/sys/stat.h:13,
from abbrec.c:1:
D:/rtools44/x86_64-w64-mingw32.static.posix/include/_mingw.h:434: note: this is the location of the previous definition
434 | #define __USE_MINGW_ANSI_STDIO 0 /* was not defined so it should be 0 */
|
abbrec.c: In function 'wprint_parsetree_abbrec':
abbrec.c:276:32: warning: value computed is not used [-Wunused-value]
276 | abbrecProcessSeq(name, pn) ||
| ^~
gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c abbrev.c -o abbrev.o
In file included from dparser3.h:10,
from abbrev.c:9:
D:/RCompile/CRANpkg/lib/4.4/dparser/include/d.h:7: warning: "__USE_MINGW_ANSI_STDIO" redefined
7 | #define __USE_MINGW_ANSI_STDIO 1
|
In file included from D:/rtools44/x86_64-w64-mingw32.static.posix/include/corecrt.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/crtdefs.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/sys/stat.h:13,
from abbrev.c:1:
D:/rtools44/x86_64-w64-mingw32.static.posix/include/_mingw.h:434: note: this is the location of the previous definition
434 | #define __USE_MINGW_ANSI_STDIO 0 /* was not defined so it should be 0 */
|
gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c data.c -o data.o
In file included from dparser3.h:10,
from data.c:9:
D:/RCompile/CRANpkg/lib/4.4/dparser/include/d.h:7: warning: "__USE_MINGW_ANSI_STDIO" redefined
7 | #define __USE_MINGW_ANSI_STDIO 1
|
In file included from D:/rtools44/x86_64-w64-mingw32.static.posix/include/corecrt.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/crtdefs.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/sys/stat.h:13,
from data.c:1:
D:/rtools44/x86_64-w64-mingw32.static.posix/include/_mingw.h:434: note: this is the location of the previous definition
434 | #define __USE_MINGW_ANSI_STDIO 0 /* was not defined so it should be 0 */
|
gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c input.c -o input.o
In file included from dparser3.h:10,
from input.c:9:
D:/RCompile/CRANpkg/lib/4.4/dparser/include/d.h:7: warning: "__USE_MINGW_ANSI_STDIO" redefined
7 | #define __USE_MINGW_ANSI_STDIO 1
|
In file included from D:/rtools44/x86_64-w64-mingw32.static.posix/include/corecrt.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/crtdefs.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/sys/stat.h:13,
from input.c:1:
D:/rtools44/x86_64-w64-mingw32.static.posix/include/_mingw.h:434: note: this is the location of the previous definition
434 | #define __USE_MINGW_ANSI_STDIO 0 /* was not defined so it should be 0 */
|
gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lst.c -o lst.o
In file included from dparser3.h:10,
from lst.c:9:
D:/RCompile/CRANpkg/lib/4.4/dparser/include/d.h:7: warning: "__USE_MINGW_ANSI_STDIO" redefined
7 | #define __USE_MINGW_ANSI_STDIO 1
|
In file included from D:/rtools44/x86_64-w64-mingw32.static.posix/include/corecrt.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/crtdefs.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/sys/stat.h:13,
from lst.c:1:
D:/rtools44/x86_64-w64-mingw32.static.posix/include/_mingw.h:434: note: this is the location of the previous definition
434 | #define __USE_MINGW_ANSI_STDIO 0 /* was not defined so it should be 0 */
|
gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mem.c -o mem.o
In file included from dparser3.h:10,
from mem.c:9:
D:/RCompile/CRANpkg/lib/4.4/dparser/include/d.h:7: warning: "__USE_MINGW_ANSI_STDIO" redefined
7 | #define __USE_MINGW_ANSI_STDIO 1
|
In file included from D:/rtools44/x86_64-w64-mingw32.static.posix/include/corecrt.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/crtdefs.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/sys/stat.h:13,
from mem.c:1:
D:/rtools44/x86_64-w64-mingw32.static.posix/include/_mingw.h:434: note: this is the location of the previous definition
434 | #define __USE_MINGW_ANSI_STDIO 0 /* was not defined so it should be 0 */
|
gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c model.c -o model.o
In file included from dparser3.h:10,
from model.c:9:
D:/RCompile/CRANpkg/lib/4.4/dparser/include/d.h:7: warning: "__USE_MINGW_ANSI_STDIO" redefined
7 | #define __USE_MINGW_ANSI_STDIO 1
|
In file included from D:/rtools44/x86_64-w64-mingw32.static.posix/include/corecrt.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/crtdefs.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/sys/stat.h:13,
from model.c:1:
D:/rtools44/x86_64-w64-mingw32.static.posix/include/_mingw.h:434: note: this is the location of the previous definition
434 | #define __USE_MINGW_ANSI_STDIO 0 /* was not defined so it should be 0 */
|
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nonmemId.cpp -o nonmemId.o
gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c omega.c -o omega.o
In file included from dparser3.h:10,
from omega.c:9:
D:/RCompile/CRANpkg/lib/4.4/dparser/include/d.h:7: warning: "__USE_MINGW_ANSI_STDIO" redefined
7 | #define __USE_MINGW_ANSI_STDIO 1
|
In file included from D:/rtools44/x86_64-w64-mingw32.static.posix/include/corecrt.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/crtdefs.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/sys/stat.h:13,
from omega.c:1:
D:/rtools44/x86_64-w64-mingw32.static.posix/include/_mingw.h:434: note: this is the location of the previous definition
434 | #define __USE_MINGW_ANSI_STDIO 0 /* was not defined so it should be 0 */
|
omega.c: In function 'wprint_parsetree_omega':
omega.c:378:5: warning: value computed is not used [-Wunused-value]
378 | || omegaParseNameOption(_arg_)
| ^~
gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c records.c -o records.o
In file included from D:/RCompile/CRANpkg/lib/4.4/dparser/include/dparser.h:12,
from records.c:9:
D:/RCompile/CRANpkg/lib/4.4/dparser/include/d.h:7: warning: "__USE_MINGW_ANSI_STDIO" redefined
7 | #define __USE_MINGW_ANSI_STDIO 1
|
In file included from D:/rtools44/x86_64-w64-mingw32.static.posix/include/corecrt.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/crtdefs.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/sys/stat.h:13,
from records.c:1:
D:/rtools44/x86_64-w64-mingw32.static.posix/include/_mingw.h:434: note: this is the location of the previous definition
434 | #define __USE_MINGW_ANSI_STDIO 0 /* was not defined so it should be 0 */
|
gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sbuf.c -o sbuf.o
gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c strncmpi.c -o strncmpi.o
gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sub.c -o sub.o
In file included from dparser3.h:10,
from sub.c:9:
D:/RCompile/CRANpkg/lib/4.4/dparser/include/d.h:7: warning: "__USE_MINGW_ANSI_STDIO" redefined
7 | #define __USE_MINGW_ANSI_STDIO 1
|
In file included from D:/rtools44/x86_64-w64-mingw32.static.posix/include/corecrt.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/crtdefs.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/sys/stat.h:13,
from sub.c:1:
D:/rtools44/x86_64-w64-mingw32.static.posix/include/_mingw.h:434: note: this is the location of the previous definition
434 | #define __USE_MINGW_ANSI_STDIO 0 /* was not defined so it should be 0 */
|
gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tab.c -o tab.o
In file included from dparser3.h:10,
from tab.c:9:
D:/RCompile/CRANpkg/lib/4.4/dparser/include/d.h:7: warning: "__USE_MINGW_ANSI_STDIO" redefined
7 | #define __USE_MINGW_ANSI_STDIO 1
|
In file included from D:/rtools44/x86_64-w64-mingw32.static.posix/include/corecrt.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/crtdefs.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/sys/stat.h:13,
from tab.c:1:
D:/rtools44/x86_64-w64-mingw32.static.posix/include/_mingw.h:434: note: this is the location of the previous definition
434 | #define __USE_MINGW_ANSI_STDIO 0 /* was not defined so it should be 0 */
|
gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c theta.c -o theta.o
In file included from dparser3.h:10,
from theta.c:9:
D:/RCompile/CRANpkg/lib/4.4/dparser/include/d.h:7: warning: "__USE_MINGW_ANSI_STDIO" redefined
7 | #define __USE_MINGW_ANSI_STDIO 1
|
In file included from D:/rtools44/x86_64-w64-mingw32.static.posix/include/corecrt.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/crtdefs.h:10,
from D:/rtools44/x86_64-w64-mingw32.static.posix/include/sys/stat.h:13,
from theta.c:1:
D:/rtools44/x86_64-w64-mingw32.static.posix/include/_mingw.h:434: note: this is the location of the previous definition
434 | #define __USE_MINGW_ANSI_STDIO 0 /* was not defined so it should be 0 */
|
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c util.cpp -o util.o
gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/dparser/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c validate.c -o validate.o
g++ -std=gnu++17 -shared -s -static-libgcc -o nonmem2rx.dll tmp.def RcppExports.o abbrec.o abbrev.o data.o init.o input.o lst.o mem.o model.o nonmemId.o omega.o records.o sbuf.o strncmpi.o sub.o tab.o theta.o util.o validate.o -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.0/bin/x64 -lR
make[1]: Leaving directory '/d/temp/RtmpQVNlpJ/R.INSTALLc1e014c92a28/nonmem2rx/src'
make[1]: Entering directory '/d/temp/RtmpQVNlpJ/R.INSTALLc1e014c92a28/nonmem2rx/src'
make[1]: Leaving directory '/d/temp/RtmpQVNlpJ/R.INSTALLc1e014c92a28/nonmem2rx/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-nonmem2rx/00new/nonmem2rx/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'nonmem2rx' as nonmem2rx_0.1.3.zip
* DONE (nonmem2rx)