- using R version 4.6.1 (2026-06-24 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 14.3.0
GNU Fortran (GCC) 14.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
* current time: 2026-07-21 06:09:09 UTC
- checking for file 'nlmixr2est/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'nlmixr2est' version '6.0.1'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'nlmixr2est' can be installed ... OK
See the install log for details.
- used C compiler: 'gcc.exe (GCC) 14.3.0'
- used C++ compiler: 'g++.exe (GCC) 14.3.0'
- checking C++ specification ... INFO
specified C++17
- checking installed package size ... INFO
installed size is 5.1Mb
sub-directories of 1Mb or more:
R 1.2Mb
libs 2.7Mb
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s] OK
- checking whether the package can be loaded with stated dependencies ... [3s] OK
- checking whether the package can be unloaded cleanly ... [3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s] OK
- checking whether the namespace can be unloaded cleanly ... [3s] OK
- checking loading without being on the library search path ... [2s] OK
- checking whether startup messages can be suppressed ... [3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [42s] OK
- checking Rd files ... [3s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in shell scripts ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compiled code ... OK
- checking examples ... [9s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [35s] ERROR
Running 'testthat.R' [35s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(data.table)
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
> library(rxode2)
rxode2 5.1.4 using 2 threads (see ?getRxThreads)
no cache: create with `rxCreateCache()`
> library(nlmixr2est)
Loading required package: nlmixr2data
Attaching package: 'nlmixr2est'
The following objects are masked from 'package:rxode2':
boxCox, yeoJohnson
> library(testthat)
> if (!identical(Sys.getenv("NOT_CRAN"), "true")) {
+ # when testing CRAN, only use two thread
+ setRxThreads(2L)
+ setDTthreads(2L)
+ Sys.setenv(OMP_NUM_THREADS = "2")
+ Sys.setenv(MKL_NUM_THREADS = "2")
+ if (identical(Sys.info()["sysname"], "Darwin")) {
+ rxode2::rxUnloadAll(set=FALSE)
+ }
+ }
>
> test_check("nlmixr2est")
✓ Loading cached fit: one.compartment.fit.saem
✓ Loading cached fit: one.compartment.fit.saem.cwres
✓ Loading cached fit: one.compartment.fit.focei
✓ Loading cached fit: one.compartment.fit.focei.fast
✓ Loading cached fit: one.compartment.fit.foce
✓ Loading cached fit: one.compartment.fit.foi
✓ Loading cached fit: one.compartment.fit.fo
✓ Loading cached fit: one.compartment.fit.posthoc
✓ Loading cached fit: one.compartment.with.lag.fit.focei
✓ Loading cached fit: one.compartment.with.lag.fit.saem
✓ Helper-fits.R loaded successfully
Cache version: v1.0.2-nlmixr2est-6.0.1
Cache directory: ./fixtures
- checking PDF version of manual ... [26s] OK
- checking HTML version of manual ... [38s] OK
- DONE
Status: 1 ERROR